Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

African horse sickness virus

ABSTRACT: African horse sickness virus Genome sequencing

PROVIDER: PRJNA271179 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1735494_1.fastq.gz	Fastqsanger.gz
	SRR1735494_2.fastq.gz	Fastqsanger.gz
	SRR1735355_1.fastq.gz	Fastqsanger.gz
	SRR1735355_2.fastq.gz	Fastqsanger.gz
	GCA_003082055.1_sequence_report.txt	Txt

Items per page:

1 - 5 of 91

Similar Datasets

African horse sickness virus

Project description:African horse sickness virus Genome sequencing

| PRJNA756858 | ENA

African Horse Sickness Virus Serotype 1 on Horse Farm, Thailand, 2020.

Project description:To investigate an outbreak of African horse sickness (AHS) on a horse farm in northeastern Thailand, we used whole-genome sequencing to detect and characterize the virus. The viruses belonged to serotype 1 and contained unique amino acids (95V,166S, 660I in virus capsid protein 2), suggesting a single virus introduction to Thailand.

| S-EPMC8314833 | biostudies-literature

African swine fever virus

Project description:African swine fever virus Genome sequencing

| PRJNA660587 | ENA

African swine fever virus

Project description:African swine fever virus Genome sequencing

| PRJNA776429 | ENA

Evidence of Intragenic Recombination in African Horse Sickness Virus.

Project description:Intragenic recombination has been described in various RNA viruses as a mechanism to increase genetic diversity, resulting in increased virulence, expanded host range, or adaptability to a changing environment. Orbiviruses are no exception to this, with intragenic recombination previously detected in the type species, bluetongue virus (BTV). African horse sickness virus (AHSV) is a double-stranded RNA virus belonging to the Oribivirus genus in the family Reoviridae. Genetic recombination through reassortment has been described in AHSV, but not through homologous intragenic recombination. The influence of the latter on the evolution of AHSV was investigated by analyzing the complete genomes of more than 100 viruses to identify evidence of recombination. Segment-1, segment-6, segment-7, and segment-10 showed evidence of intragenic recombination, yet only one (Segment-10) of these events was manifested in subsequent lineages. The other three hybrid segments were as a result of recombination between field isolates and the vaccine derived live attenuated viruses (ALVs).

| S-EPMC6669442 | biostudies-literature

African swine fever virus tropism for different organ tissues and host transcriptomic responses in experimentally infected pigs

Project description:Purpose: This goal of this study was to explore the host transcriptomic responses in African swine fever virus experimentally infected pigs using RNA-Sequencing. Methods: RNAs acquired from ten different organ tissue samples were sequenced. Sequencing reads were preprocessed, aligned with the reference genome, assembled and expressions were estimated through bioinformatics approaches. Result: Several uprugulated DEGs were identified. Conclusion: We found important candidate genes and pathways for further testing in African swine fever virus infection in pig.

2023-04-23 | GSE230340 | GEO

Characterising Non-Structural Protein NS4 of African Horse Sickness Virus.

Project description:African horse sickness is a serious equid disease caused by the orbivirus African horse sickness virus (AHSV). The virus has ten double-stranded RNA genome segments encoding seven structural and three non-structural proteins. Recently, an additional protein was predicted to be encoded by genome segment 9 (Seg-9), which also encodes VP6, of most orbiviruses. This has since been confirmed in bluetongue virus and Great Island virus, and the non-structural protein was named NS4. In this study, in silico analysis of AHSV Seg-9 sequences revealed the existence of two main types of AHSV NS4, designated NS4-I and NS4-II, with different lengths and amino acid sequences. The AHSV NS4 coding sequences were in the +1 reading frame relative to that of VP6. Both types of AHSV NS4 were expressed in cultured mammalian cells, with sizes close to the predicted 17-20 kDa. Fluorescence microscopy of these cells revealed a dual cytoplasmic and nuclear, but not nucleolar, distribution that was very similar for NS4-I and NS4-II. Immunohistochemistry on heart, spleen, and lung tissues from AHSV-infected horses showed that NS4 occurs in microvascular endothelial cells and mononuclear phagocytes in all of these tissues, localising to the both the cytoplasm and the nucleus. Interestingly, NS4 was also detected in stellate-shaped dendritic macrophage-like cells with long cytoplasmic processes in the red pulp of the spleen. Finally, nucleic acid protection assays using bacterially expressed recombinant AHSV NS4 showed that both types of AHSV NS4 bind dsDNA, but not dsRNA. Further studies will be required to determine the exact function of AHSV NS4 during viral replication.

| S-EPMC4411093 | biostudies-literature

African swine fever virus

Project description:African swine fever virus Genome sequencing and assembly

| PRJNA559072 | ENA

African swine fever virus

Project description:African swine fever virus Genome sequencing and assembly

| PRJNA555080 | ENA

African swine fever virus

Project description:African swine fever virus Genome sequencing and assembly

| PRJNA647921 | ENA