Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Streptomyces ahygroscopicus subsp. wuyiensis strain:CK-15

ABSTRACT: Streptomyces ahygroscopicus subsp. wuyiensis strain:CK-15 Genome sequencing

PROVIDER: PRJNA271725 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Galbibacter marinus strain:ck-I2-15

Project description:Galbibacter marinus strain:ck-I2-15 Genome sequencing and assembly

| PRJNA170404 | ENA

The genome of Streptomyces rimosus shows a novel structure compared to other Streptomyces

Project description:This study compared the genome of Streptomyces rimosus rimosus against that of Streptomyces coelicolor. It also compared 4 strains with changes in oxytetracycline production and derived from G7, the type strain, against G7. Keywords: Comparative genomic hybridization

2008-01-11 | GSE10126 | GEO

Project description:CK Raw sequence reads

| PRJNA739459 | ENA

Streptomyces sp. Ag109_G2-15

Project description:Streptomyces sp. Ag109_G2-15 Genome sequencing

| PRJNA363975 | ENA

Streptomyces scabiei strain:96-15

Project description:Streptomyces scabiei strain:96-15 Genome sequencing and assembly

| PRJNA309853 | ENA

Streptomyces lavendulae strain:YAKB-15

Project description:Streptomyces lavendulae strain:YAKB-15 Genome sequencing and assembly

| PRJNA526603 | ENA

LFQ of Campylobacter fetus subsp. fetus strains

Project description:Comparsion of proteomes of Campylobacter fetus subsp. fetus to compare protein level via iBAQ analysis, expression (by LFQ) and coverage between Campylobacter fetus subsp. fetus strain82-40 vs Campylobacter fetus subsp. fetus strain ATCC 27374

2020-05-25 | PXD014538 | Pride

Streptomyces sp. ADI96-15

Project description:Streptomyces sp. ADI96-15 Genome sequencing and assembly

| PRJNA503725 | ENA

Streptomyces sp. Ag82_O1-15

Project description:Streptomyces sp. Ag82_O1-15 Genome sequencing and assembly

| PRJNA363972 | ENA

Transcriptome analysis of lysozyme treated S. gallolyticus subsp. gallolyticus [UCN34]

Project description:Streptococcus gallolyticus subsp. gallolyticus is a commensal of the human gastrointestinal tract and a pathogen of infective endocarditis and other biofilm-associated infections with exposed collagen. Therefore, this study focuses on the characterization of the biofilm formation and collagen adhesion of S. gallolyticus subsp. gallolyticus under different conditions. It has been observed that lysozyme triggers biofilm formation divergently in the analyzed S. gallolyticus subsp. gallolyticus strains. The transcriptome analysis was performed for two strains which form more biofilm in the presence of lysozyme. Lysozyme leads to higher expression of genes of transcription and translation, of the dlt operon (cell wall modification), of hydrogen peroxide resistance proteins and of two immunity proteins which could be involved in biofilm formation. Furthermore, the adhesion ability of 73 different S. gallolyticus subsp. gallolyticus strains to collagen type I and IV was analyzed. High adhesion ability was observed for the strain UCN 34, whereas the strain DSM 16831 adhered only marginally to collagen. The full genome microarray analysis revealed strain-dependent gene expression due to adhesion. The expression of genes of a transposon and a phage region in strain DSM 16831 were increased, which corresponds to lateral gene transfer. Adherence to collagen leads to a change in the expression of genes of nutrients uptake in the strain UCN 34.

2017-05-17 | GSE98952 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data