Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hypericum perforatum

ABSTRACT: Hypericum perforatum Transcriptome or Gene expression

PROVIDER: PRJNA271854 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2062465_1.fastq.gz	Fastqsanger.gz
	SRR2062465_2.fastq.gz	Fastqsanger.gz
	SRR2062466_1.fastq.gz	Fastqsanger.gz
	SRR2062466_2.fastq.gz	Fastqsanger.gz
	SRR2062467_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Hypericum perforatum

Project description:Hypericum perforatum Transcriptome or Gene expression

| PRJNA266601 | ENA

Hypericum perforatum

Project description:Hypericum perforatum Transcriptome or Gene expression

| PRJNA167322 | ENA

Hypericum perforatum

Project description:Hypericum perforatum Transcriptome or Gene expression

| PRJNA503318 | ENA

Hypericum perforatum

Project description:Hypericum perforatum Transcriptome or Gene expression

| PRJNA80061 | ENA

Hypericum perforatum LCM-RNAseq

Project description:Hypericum perforatum L. (2n=4x=32) is an attractive model system for the study of aposporous apomixis. The earliest phenotypic features of aposporous apomixis in this species are the mitotic formation of unreduced embryo sacs from a somatic cell of the ovule nucellus and the avoidance of meiosis. In this research we addressed gene expression variation in sexual and apomictic plants, by focusing on the ovule nucellus, which is the cellular domain primarily involved into the differentiation of meiocyte precursors and aposporous embryo sacs. Gene expression analysis performed by RNAseq identified 396 differentially expressed genes and 1834 transcripts displaying phenotype-specific expression. Overall, our data suggest that phenotypic expression of aposporous apomixis is concomitant with the modulation of key genes involved in cell patterning, RNA splicing and RNA-directed DNA methylation.

2019-03-28 | GSE128923 | GEO

Hypericum perforatum

Project description:Hypericum perforatum Organism overview

| PRJNA84113 | ENA

Hypericum perforatum

Project description:Hypericum perforatum LCM-RNAseq

| PRJNA521154 | ENA

Hypericum perforatum

Project description:Hypericum perforatum Raw sequence reads

| PRJNA598926 | ENA

Hypericum perforatum

Project description:Hypericum perforatum Genome Raw sequence reads

| PRJNA588586 | ENA

Expression data from LPS-stimulated RAW 264.7 mouse macrophages treated with Hypericum perforatum fraction and bioactive constituents

Project description:Hypericum perforatum extracts have been used as dietary supplements to treat conditions including mild-moderate depression and inflammation. A group of four bioactive constituents were identified from an active fraction of the extract. In order to identify the mechanism for the potential anti-inflammatory activity of the identified compounds, we used Affymatrix microarray to study the gene expression profile impacteded by these compounds, as well as the active fraction in LPS-stimulated mouse macrophages.

2010-05-15 | GSE21841 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data