Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Crassostrea gigas

ABSTRACT: Gill transcriptome sequencing of Crassostrea gigas after OsHV-1 challenge

PROVIDER: PRJNA282703 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2002940.fastq.gz	Fastqsanger.gz
	SRR2002950.fastq.gz	Fastqsanger.gz
	SRR2002821.fastq.gz	Fastqsanger.gz
	SRR2002941.fastq.gz	Fastqsanger.gz
	SRR2002951.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 33

Similar Datasets

Transcriptome sequencing of Pacific oyster Crassostrea gigas

Project description:Deep sequencing of mRNA from Pacific oyster Crassostrea gigas

2014-07-26 | GSE31011 | GEO

Physiological change under OsHV-1 contamination in Pacific oyster Crassostrea gigas through massive mortality events on fields

Project description:Massive mortalities have been observed in France since 2008 on spat and juvenile Pacific oysters, Crassostrea gigas. A herpes virus called OsHV-1, easily detectable by PCR, has been implicated in the mortalities as demonstrated by the results of numerous field studies linking mortality with OsHV-1 prevalence. Moreover, experimental infections using viral particles have documented the pathogenicity of OsHV-1. The physiological responses of host to pathogen are not well known. In this study, a number of genes involved in the response to viral challenge have been identified and can be considered as confirmation of the role of the virus in the observed mortality. The aim of this study was to understand mechanisms brought into play against the virus during infection in the field. A microarray assay has been developed for a major part of the oyster genome and used for studying the host transcriptome. Spat with and without detectable OsHV-1 infection were compared by microarray during mortality episodes. The result allowed establishment of a hypothetic scheme of the host cell’s infection by, and response to, the pathogen. This response seems to be different to “sensu stricto” innate immunity through genic regulation of the virus life cycle. . Some regulatory response against the virus may explain that some oysters are able to survive infection by regulation of the viral genes associated with the OsHV-1 life cycle.

2013-06-28 | GSE46249 | GEO

Transcriptome sequencing of Pacific oyster Crassostrea gigas

Project description:Deep sequencing of mRNA from Pacific oyster Crassostrea gigas Competent larvae of Crassostrea gigas were treated with epinephrine solution, and then sampled at different time intervals. For shell damage experiment, shell were broken and then tissues were sampled at different time intervals.

2014-07-26 | E-GEOD-31011 | biostudies-arrayexpress

miRNA of Pacific oyster Crassostrea gigas for different organs and developmental stages

Project description:miRNA sequencing of Pacific oyster Crassostrea gigas for different organs and developmental stages.

2014-07-26 | GSE31009 | GEO

Physiological change under OsHV-1 contamination in Pacific oyster Crassostrea gigas through massive mortality events on fields

2013-06-28 | E-GEOD-46249 | biostudies-arrayexpress

Crassostrea gigas

Project description:Transcriptome of Crassostrea gigas infected by OsHV-1 at high temperatures

| PRJNA593309 | ENA

Proteomic signatures of the Pacific oyster Crassostrea gigas cellular response to Ostreid herpes virus -1 (OsHV-1) infection: a metabolic response.

Project description:To better understand the pathogenesis of OsHV-1 and to determine which cell pathways might be affected during OsHV-1 infection, we used an experimental infection in the Pacific oyster Crassostrea gigas by intra-muscular injection with a low or high load of OsHV-1. Animals were sampled 2 days post-injection (dpi) which corresponds to the incubation period required for OsHV1 to initiate an intense replication phase. Twenty-five abundant proteins linked to infection process were identified using a two-dimensional electrophoresis (2-DE) proteomic approach.

2014-07-10 | PXD000905 | Pride

RNA-seq of Pacific oyster Crassostrea gigas under different developmental stages and stress treatments

Project description:Deep sequencing of samples from different development stages, different adult organs and different stress treatments of Pacific oyster Crassostrea gigas

2012-09-13 | GSE31012 | GEO

Crassostrea gigas

Project description:Crassostrea gigas gene expression profiling - Crassostrea gigas transcriptome

| PRJNA584843 | ENA

Crassostrea gigas

Project description:Crassostrea gigas transcriptome

| PRJNA71219 | ENA