Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mus musculus

ABSTRACT: Transcriptome-wide mapping of RNA:protein interactions of seven SR proteins and NXF1 in P19 cells by iCLIP

OTHER RELATED OMICS DATASETS IN: GSE69734

PROVIDER: PRJNA286202 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Knockdown of SR protein family in P19 cells and RNA-seq of cytoplasmic and whole cell polyA+ RNA

2016-03-07 | GSE69733 | GEO

Knockdown of SR protein family in P19 cells and RNA-seq of cytoplasmic and whole cell polyA+ RNA

Project description:Our data suggest that all SR proteins contribute to mRNA export via NXF1. To identify endogenous export targets we depleted all seven SR proteins individually from P19 WT cells prepared cytoplasmic fractions. We sequenced the cytoplasmic fraction and as a control whole celll RNA from the identical sample. Knockdown of seven SR Proteins plus control, total RNA and cytoplasmic RNA, polyA+ enriched, 2 biological replicates per condition, 2 technical replicates per condition

2016-03-07 | E-GEOD-69733 | biostudies-arrayexpress

Transcriptome-wide mapping of RNA:protein interactions of seven SR proteins and NXF1 in P19 cells by iCLIP

Project description:We used GFP-tagged SR proteins expressed at endogenous levels and iCLIP to identify and compare endogenous RNA targets of individual SR proteins, map the preferential sites of binding, compare binding pattern and binding motifs between family members and to NXF1 and quantify binding of SR proteins and NXF1 to spliced versus unspliced RNAs to study the role of SR proteins in mRNA export via NXF1.

2016-03-07 | GSE69689 | GEO

Transcriptome-wide mapping of RNA:protein interactions of three SR proteins in HeLa cells by iCLIP

Project description:Transcriptome-wide mapping of RNA:protein interactions of three SR proteins in HeLa cells by iCLIP

| PRJNA454026 | ENA

iCLIP seq reveals distribution of genome-wide SR protein-RNA binding

Project description:We identified the precise genome-wide binding sites for all SR proteins, using iCLIP-seq SR proteins were encoded on stable transgenes, transfected in S2 cells, FLAG-tag immunopurified, and the bound RNA purified and subjected to RNA-seq. The resulting reads (CLIP tags) were aligned to the Drosophila genome and generated 38,695-5,900,000 unique CLIP tags for each SR-protein replicate.

2014-11-23 | E-GEOD-63262 | biostudies-arrayexpress

iCLIP seq reveals distribution of genome-wide SR protein-RNA binding

Project description:We identified the precise genome-wide binding sites for all SR proteins, using iCLIP-seq

2014-11-23 | GSE63262 | GEO

Transcriptome-wide mapping of RNA:protein interactions of three SR proteins in HeLa cells by iCLIP

Project description:We used GFP-tagged SR proteins expressed at endogenous levels and iCLIP to compare the extent and pattern of SR protein binding to expression-matched lincRNAs and protein-coding RNAs

2018-10-31 | GSE113813 | GEO

Transcriptome-wide mapping of RNA:protein interactions of CPSF5 and FIP1 in P19 cells by iCLIP

Project description:Transcriptome-wide mapping of RNA:protein interactions of CPSF5 and FIP1 in P19 cells by iCLIP

| PRJNA637053 | ENA

Transcriptome-wide mapping of RNA:protein interactions of three SR proteins in HeLa cells

Project description:Transcriptome-wide mapping of RNA:protein interactions of three SR proteins in HeLa cells

| PRJNA454020 | ENA

Transcriptome-wide mapping of RNA:protein interactions of SRSF7 variants in P19 cells by iCLIP and piCLIP

Project description:Transcriptome-wide mapping of RNA:protein interactions of SRSF7 variants in P19 cells by iCLIP and piCLIP

| PRJNA590667 | ENA