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Rhizophagus irregularis

ABSTRACT: Rhizophagus irregularis Raw sequence reads

PROVIDER: PRJNA287285 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR2725260_1.fastq.gz	Fastqsanger.gz
	SRR2725260_2.fastq.gz	Fastqsanger.gz
	SRR2726140_1.fastq.gz	Fastqsanger.gz
	SRR2726140_2.fastq.gz	Fastqsanger.gz
	SRR2727640_1.fastq.gz	Fastqsanger.gz

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Rhizophagus irregularis

Project description:Rhizophagus irregularis Raw sequence reads

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Small RNA sequencing in tomato roots with and without Rhizophagus irregularis

Project description:Arbuscular mycorrhizal symbiosis is a predominant relationship between plant and arbuscular mycorrhizal fungi. To idendify arbuscular mycorrhiza responsive miRNAs, small RNA libraries were constructed in tomato roots colonized with Rhizophagus irregularis and without Rhizophagus irregularis. We identify miRNAs in tomato roots and provide a new profile of tomato miRNAs. And we found that some miRNAs were responsive to arbuscular mycorrhiza by comparing miRNAs in treatment with that in control. Examination of arbuscular mycorrhiza responsive miRNAs in tomato through high-throughput small RNA sequencing of roots with Rhizophagus irregularis and that without Rhizophagus irregularis

2016-07-20 | E-GEOD-76204 | biostudies-arrayexpress

Rhizophagus irregularis

Project description:Rhizophagus irregularis - Hyphae RNAseq sequence reads

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Small RNA sequencing in tomato roots with and without Rhizophagus irregularis

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Rhizophagus irregularis

Project description:Rhizophagus irregularis

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responses of maize to the arbuscular fungus rhizophagus irregularis mitigate n deficiency stress-Physiological and molecular responses of maize to the arbuscular mycorrhizla fungus 5AMF) Rhizophagus irregularis mitigate nitrogen deficiency stress.

Project description:ngs2021_19_rhizophagus-responses of maize to the arbuscular fungus rhizophagus irregularis mitigate n deficiency stress-What is the impact of Rhizophagus irregularis on maize transcriptome under different N nutrition conditions, what is the impact of N on R. irregularis transcriptome in maize roots.-After 4 days of germination, maize seeds were sown in pots filled with sterile mix 1:1 clay beads:unfertilized peat. Inoculation performed in 3 times with Rhizohphagus irregularis spores purchased at Agronutrition. First inoculation perfomed with 500 spores/plant at sowing. Two other incoulations performed the following week and 2 weeks later with 100 spore per plant each.

2023-12-13 | GSE235654 | GEO

Rhizophagus irregularis

Project description:Rhizophagus irregularis Transcriptome sequencing

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Rhizophagus irregularis gene regulation in response to rice root exudates

Project description:Purpose: The recent publication of the fungal mutualist R. irregularis genome facilitated transcriptomic studies. We here adress the gene regulation of R. irregularis in response to root exudates from rice wild-type and osnope1 (no perception candidate - mutant unable to host arbuscular mycorrhizal fungi) Methods: Spores of R. irregularis were treated with root exudates and collected at 1 hour, 24 hours and 7 days after addition. To monitor fungal gene regulation, control conditions were also prepared at T0, 1h, 24h and 7d. mRNA were sequenced by HiSeq Illumina. Reads were mapped on the Rhizophagus irregularis genome assembly (Gloin1 - Tisserant et al., PNAS, 2013) using CLCworkbench suite. Results: -At 1h, a set of 92 fungal genes were found up-regulated in response to wt root exudates (92), not to osnope1 root exudates, many of them being involved in cell signaling. -At 24h and 7d, numerous genes putatively involved in primary metabolism were up-regulated in response to wt root exudates, not in response to osnope1 root exudates -Several vital genes involved in cell development are repressed in response to osnope1 RE compared to wt RE. Conclusions: these results argue for a high metabolic activity induced by wt root exudates, not by osnope1 root exudates.

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Rhizophagus irregularis

Project description:Rhizophagus irregularis Transcriptome or Gene expression

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Rhizophagus irregularis

Project description:Rhizophagus irregularis genomics diversity with RAD-sequencing

| PRJNA326895 | ENA