Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hypsibius dujardini

ABSTRACT: Hypsibius dujardini Genome sequencing and assembly

PROVIDER: PRJNA298443 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	LMYF01.dat.gz	Other
	LMYF01.fasta.gz	Fasta.gz
	LMYF01.master.dat	Other
	SRR2986451_1.fastq.gz	Fastqsanger.gz
	SRR2986451_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 17

Similar Datasets

Hypsibius dujardini

Project description:Hypsibius dujardini Genome sequencing and assembly

| PRJNA298443 | ENA

RNA-Seq analysis of developmental, juvenile, and anhydrobiotic stages of Hypsibius dujardini and Ramazzottius varieornatus

Project description:Limno-terrestrial tardigrades enter a state called anhydrobiosis when exposed to desiccation, and acquire tolerance against various extreme environments. The anhydrobiotic tardigrade Hypsibius dujardini, is a non-pigmented tardigrade easy to culture and RNAi method have been established, therefore making it a model tardigrade for tardigrade molecular research. Previous genome assemblies of this tardigrade had increased size due to heterozygosity. Here, we have sequenced the genome of H. dujardini using single individual Illumina DNA-Seq data and PacBio long read data, and employed a heterozygosity aware assembly method to assemble a near-complete high quality genome. In order to annotate the genome with gene predictions, we conducted RNA-Sequencing of various stages of developmental, juvenile, adult, and anhydrobiotic stage H. dujardini and Ramazzottius varieornatus, a tardigrade capable of rapid anhydrobiosis entry, and used these data for gene prediction with BRAKER v1.9 or differential gene expression analysis of the active and anhydrobiotic stages.

2017-02-28 | GSE94295 | GEO

Hypsibius dujardini strain:ED

Project description:Hypsibius dujardini strain:ED Genome sequencing

| PRJEA78171 | ENA

Hypsibius dujardini strain:Sciento

Project description:Hypsibius dujardini strain:Sciento Genome sequencing and assembly

| PRJNA309530 | ENA

Hypsibius dujardini strain:Z151

Project description:Hypsibius dujardini strain:Z151 Genome sequencing and assembly

| PRJNA360553 | ENA

Hypsibius dujardini

Project description:Hypsibius dujardini high resolution developmental transcriptomic time-course