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Gluconobacter oxydans

ABSTRACT: Gluconobacter oxydans Raw sequence reads

PROVIDER: PRJNA299470 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	SRR2803012_1.fastq.gz	Fastqsanger.gz
	SRR2803012_2.fastq.gz	Fastqsanger.gz
	SRR2803664_1.fastq.gz	Fastqsanger.gz
	SRR2803664_2.fastq.gz	Fastqsanger.gz
	SRR2803725_1.fastq.gz	Fastqsanger.gz

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Global mRNA decay in Gluconobacter oxydans 621H

Project description:In this study we conducted genome-wide mRNA decay analysis to get further insights into the physiology of Gluconobacter oxydans.

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Transcriptome response of Gluconobacter oxydans against five typical aldehyde inhibitors

Project description:Toxic inhibitory compounds from lignocellulose pretreatment are the major obstacle to achieve high bioconversion efficiency in biorefinery fermentations. This study shows a unique glucose oxidation catalysis of Gluconobacter oxydans with its gluconic acid productivity free of inhibitor disturbance. The microbial experimentations and the transcriptome analysis revealed that both the activity of the membrane-bound glucose dehydrogenase (mGDH) and the transcription level of the genes in periplasmic glucose oxidation respiratory chain of G. oxydans were essentially not affected under the existence of inhibitory compounds. G. oxydans also rapidly converted furan and phenolic aldehyde inhibitors into the less toxic alcohols or acids. The synergy of the robust periplasmic glucose oxidation and the rapid inhibitor conversion of G. oxydans significantly elevated the efficiency of the oxidative fermentation in lignocellulose hydrolysate. The corresponding genes responsible for the conversion of furan and phenolic aldehyde inhibitors were also mined by DNA microarrays. The synergistic mechanism of G. oxydans provided an important option of metabolic modification for enhancing inhibitor tolerance of general fermentation strains.

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Project description:Gene expression in the obligatory aerobic acetic acid bacterium Gluconobacter oxydans was shown to respond to oxygen limitation, but the regulators involved are unknown. In this study, we analyzed the function of a transcriptional regulator named GoxR, which belongs to the FNR family. Here, we aplied RNAseq to identify target genes of GoxR by comparing genes expression of a delta-goxR and its parental strain after 20 min of oxygen limitation.

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