Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome datasets of big-fruit tomato MM, cherry tomato CC and wild tomato PP

ABSTRACT: Transcriptome datasets of big-fruit tomato MM, cherry tomato CC and wild tomato PP

PROVIDER: PRJNA301611 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2932525.fastq.gz	Fastqsanger.gz
	SRR2932526.fastq.gz	Fastqsanger.gz
	SRR2932527.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Transcriptome datasets of big-fruit tomato MM, cherry tomato CC and wild tomato PP

Project description:Six stages of flower and fruit materials from S. lycopersicum var. Moneymaker (MM), S. lycopersicum var. cerasiforme LA1310 (CC) and Solanum pimpinellifolium PI365967 (PP) including 5DPA, 20DPA, mature green, break stage and red ripen fruits and -2DPA flower

2018-01-01 | GSE74828 | GEO

Tomato big bud phytoplasma

Project description:Tomato big bud phytoplasma overview

| PRJNA188038 | ENA

fungi in the soil of Cherry Tomato

Project description:fungi in the soil of Cherry Tomato Raw sequence reads

| PRJNA647950 | ENA

4plex_tomato_2013_03: Effect of drought stress on the transcriptome of tomato leaves

Project description:4plex_tomato_2013_03 - 4plex_tomato_2013_03 - What are the genes implied in drought resistance in tomato ? - 2 strains of tomato (Cervil, a cherry tomato, and Levovil, an large fruited tomato) were cultivated under normal hydric conditions and drought stress. Young leaves were gathered 3 1/2 months after sawing for analysis.

2015-07-01 | GSE69898 | GEO

4plex_tomato_2013_03: Effect of drought stress on the transcriptome of tomato leaves

2015-07-01 | E-GEOD-69898 | biostudies-arrayexpress

Solanum lycopersicum strain:Cherry, Purple Calabash, LA2377, Yellow Tomato, Hardin's Miniature Tomato, Baxter's Early Bush Cherry, German Cherry, Heinz 1706-BG, Black Cherry, Cherokee Purple, Delicious, Jersey Devil, Yellow Stuffer, Mortgage Lifter

Project description:Solanum lycopersicum strain:Cherry, Purple Calabash, LA2377, Yellow Tomato, Hardin's Miniature Tomato, Baxter's Early Bush Cherry, German Cherry, Heinz 1706-BG, Black Cherry, Cherokee Purple, Delicious, Jersey Devil, Yellow Stuffer, Mortgage Lifter Genome sequencing

| PRJNA256298 | ENA

Trancriptomic analysis of flower bud dormancy in sweet cherry

Project description:Bud dormancy is a crucial stage in perennial trees and allows survival over winter and optimal subsequent flowering and fruit production. Environmental conditions, and in particular temperature, have been shown to influence bud dormancy. Recent work highlighted some physiological and molecular events happening during bud dormancy in trees. However, we still lack a global understanding of transcriptional changes happening during bud dormancy. We conducted a fine tune temporal transcriptomic analysis of sweet cherry (Prunus avium L.) flower buds from bud organogenesis until the end of bud dormancy using next-generation sequencing. We observe that buds in organogenesis, paradormancy, endodormancy and ecodormancy are characterised by distinct transcriptional states, and associated with different pathways. We further identified that endodormancy can be separated in two phases based on its transcriptomic state: early and late endodormancy. We also found that transcriptional profiles of just 7 genes are enough to predict the main cherry tree flower buds dormancy stages. Our results indicate that transcriptional changes happening during dormancy are robust and conserved between different sweet cherry cultivars. Our work also sets the stage for the development of a fast and cost effective diagnostic tool to molecularly define the flower bud stage in cherry trees.

2019-12-16 | GSE130426 | GEO

Proteomic changes in sweet cherry fruit (cv. ‘Tsolakeika’) in response to calcium application.

Project description:The experiment was performed in a commercial sweet cherry (cv. Tsolakeika, Prunus avium L.) orchard in North Greece (Edessa) during 2017 growing season. The orchard contained 10-years old trees, planted at 5x5 m spacing between rows and along the row, grafted onto Mahaleb cherry (Prunus mahaleb L.) rootstock, trained in open vase and subjected to standard cultural practices. Three foliar sprays (0.5% or 35 mM CaCl2) were performed at 15, 27 and 37 days after full blossom (DAFB). Cherry fruits (exocarp plus mesocarp tissues) were sampled in two developmental stages, namely at full red color (44 DAFB, S4 stage) and at commercial harvest (55 DAFB, S5 stage). Three biological replicates of 20-fruit sub-lots in control and Ca-treated fruits were frozen in liquid nitrogen, grinding in fine powder and stored at -80 ⁰C for proteomic processing.

2021-11-01 | PXD018227 | Pride

RNAseq of Maize stem at big flare period

Project description:Four samples from the low and high hybrid at big flare period were used for RNA sequencing.

2018-06-28 | GSE116366 | GEO

Role of pp-ips in rpd3 complex and the environmental stress response (ESR)

Project description:Cells respond to stress and starvation by adjusting their growth rate and enacting stress defense programs. In eukaryotes this involves inactivation of TORC1, which in turn triggers downregulation of ribosome and protein synthesis genes and upregulation of stress response genes. Here we report that the highly conserved inositol pyrophosphate second messengers (including 1-PP-IP5, 5-PP-IP4, and 5-PP-IP5) are also critical regulators of cell growth and the general stress response, acting in parallel to the TORC1 pathway to control the activity of the class I HDAC Rpd3L. In fact, yeast cells that cannot synthesize any of the PP-IPs mount little to no transcriptional response in osmotic, heat, or oxidative stress. Furthermore, PP-IP dependent regulation of Rpd3L occurs independently of the role individual PP-IPs (such as 5-PP-IP5) play in activating specialized stress/starvation response pathways. Thus, the PP-IP second messengers simultaneously activate and tune the global response to stress and starvation signals.

2013-03-22 | GSE45370 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data