Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Eleutherococcus senticosus

ABSTRACT: Eleutherococcus senticosus Transcriptome or Gene expression

PROVIDER: PRJNA302260 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2919282.fastq.gz	Fastqsanger.gz
	SRR2919284.fastq.gz	Fastqsanger.gz
	SRR2919286.fastq.gz	Fastqsanger.gz
	SRR2919277_1.fastq.gz	Fastqsanger.gz
	SRR2919277_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Eleutherococcus senticosus

Project description:Eleutherococcus senticosus Transcriptome or Gene expression

| PRJNA263131 | ENA

Eleutherococcus senticosus

Project description:Eleutherococcus senticosus Transcriptome or Gene expression

| PRJNA789036 | ENA

Eleutherococcus senticosus

Project description:Eleutherococcus senticosus overview

| PRJNA78743 | ENA

Eleutherococcus senticosus

Project description:Eleutherococcus senticosus Genome sequencing and assembly

| PRJNA708161 | ENA

Project description:Transcriptome of Eleutherococcus senticosus

| PRJNA728574 | ENA

Eleutherococcus sessiliflorus

Project description:Eleutherococcus sessiliflorus overview

| PRJNA852337 | ENA

Eleutherococcus nodiflorus

Project description:Eleutherococcus nodiflorus Genome sequencing and assembly

| PRJNA808818 | ENA

Eleutherococcus sessiliflorus

Project description:Eleutherococcus sessiliflorus Genome sequencing and assembly

| PRJNA844212 | ENA

Phytochemical Content and Pharma-Nutrition Study on Eleutherococcus senticosus Fruits Intractum.

Project description:In the past two decades public interest in herbal products has increased significantly in Europe, especially in the plant-based products from non-European traditions. Eleutherococcus senticosus has been used for the treatment of inflammatory diseases, anemia, and rheumatoid arthritis. The Eleutherococcus senticosus fruits intractum was examined for the content of phenolic acids (LC-ESI-MS/MS), minerals (AAS), TPC, and TFC (spectrophotometric assay). The antioxidant activity was determined using free radical scavenging assay and TLC-DB-DPPH? dot-blot test. An anti-Hyal activity was evaluated by the spectrophotometric assay method. Cytotoxicity towards HL-60, HL-60/MX1, HL-60/MX2, CEM/C1, and CCRF/CEM leukemic cell lines was done using trypan blue test. Among eight phenolic acids, trans-caffeic acid was found in the largest amount (41.2?mg/g?DE). The intractum presented a high amount of macroelements (Ca, Mg, K; 1750, 1300, and 21000?mg/kg) and microelements (Fe, Mn; 32.7, 54.3?mg/kg), respectively. The content of TPC and TFC was 130 and 92?mg/g DE, respectively. The intractum showed anti-Hyal activity (2.16-60%) and an antioxidant capacity (EC50; 52??g/mL). The intractum most strongly inhibited the growth of HL-60, HL-60/MX1, and CCRF/CEM. A better understanding of the intractum health benefits is important in order to increase its utility and enrich dietary sources of health promoting compounds.

| S-EPMC5098108 | biostudies-literature

Transcriptomic analysis of Siberian ginseng (Eleutherococcus senticosus) to discover genes involved in saponin biosynthesis.

Project description:BACKGROUND:Eleutherococcus senticosus, Siberian ginseng, is a highly valued woody medicinal plant belonging to the family Araliaceae. E. senticosus produces a rich variety of saponins such as oleanane-type, noroleanane-type, 29-hydroxyoleanan-type, and lupane-type saponins. Genomic or transcriptomic approaches have not been used to investigate the saponin biosynthetic pathway in this plant. RESULT:In this study, de novo sequencing was performed to select candidate genes involved in the saponin biosynthetic pathway. A half-plate 454 pyrosequencing run produced 627,923 high-quality reads with an average sequence length of 422 bases. De novo assembly generated 72,811 unique sequences, including 15,217 contigs and 57,594 singletons. Approximately 48,300 (66.3%) unique sequences were annotated using BLAST similarity searches. All of the mevalonate pathway genes for saponin biosynthesis starting from acetyl-CoA were isolated. Moreover, 206 reads of cytochrome P450 (CYP) and 145 reads of uridine diphosphate glycosyltransferase (UGT) sequences were isolated. Based on methyl jasmonate (MeJA) treatment and real-time PCR (qPCR) analysis, 3 CYPs and 3 UGTs were finally selected as candidate genes involved in the saponin biosynthetic pathway. CONCLUSIONS:The identified sequences associated with saponin biosynthesis will facilitate the study of the functional genomics of saponin biosynthesis and genetic engineering of E. senticosus.

| S-EPMC4369101 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data