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Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028

ABSTRACT: Identification of binding sites for σ54 (RpoN) in Salmonella Typhimurium ATCC14028 [ChIP]

PROVIDER: PRJNA302719 | ENA |

REPOSITORIES: ENA

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Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028

Project description:Identification of regulatory activities for σ54 (RpoN) in Salmonella Typhimurium ATCC14028 [expression]

| PRJNA302720 | ENA

Identification of binding sites for σ54 (RpoN) in Salmonella Typhimurium ATCC14028 [ChIP]

Project description:ChIP-chip analysis of DNA specifically bound to anti-σ54 from mid-exponentially growing Salmonella enterica sv Typhimurium ATCC14028 wild type and ΔrpoN mutant cultures containing plasmid pPBHP192 expressing protein DctD250

2017-03-27 | GSE75179 | GEO

Identification of regulatory activities and binding sites for σ54 (RpoN) in Salmonella Typhimurium ATCC14028

Project description:Identification of regulatory activities and binding sites for σ54 (RpoN) in Salmonella Typhimurium ATCC14028

| PRJNA302717 | ENA

Expression analysis of Salmonella enterica serovar Typhimurium 14028 delta GidA mutant

2011-07-20 | GSE30787 | GEO

ChIP-chip analysis of RNAP and Sigma factor binding to the Salmonella enterica serovar Typhimurium chromosome

Project description:ChIP-chip analysis of RNA Polymerase (RNAP), RpoD, RpoE, RpoH and RpoN in exponential phase (OD 0.2) and early stationary phase (OD 2.0) Salmonella enterica serovar Typhimurium SL1344 cultures

2017-04-01 | GSE97283 | GEO

Expression analysis of Salmonella enterica serovar Typhimurium 14028 delta GidA mutant

Project description:Investigation of whole genome gene expression level changes in a Salmonella enterica serovar Typhimurium 14028 delta GidA mutant The mutant described in this study is further analyzed in Shippy, D. C., N. M. Eakley, P. N. Bochsler, and A. A. Fadl. 2011. Biological and virulence characteristics of Salmonella enterica serovar Typhimurium following deletion of glucose-inhibited division (gidA) gene. Microb Pathog. A single chip study using three separate cultures of wild-type Salmonella enterica serovar Typhimurium 14028 and three separate cultures of a single mutant, delta GidA Salmonella enterica serovar Typhimurium 14028.

2011-07-19 | E-GEOD-30787 | biostudies-arrayexpress

Identification of regulatory activities for σ54 (RpoN) in Salmonella Typhimurium ATCC14028 [expression]

Project description:Transcriptional profiles of mid-exponentially growing Salmonella enterica sv Typhimurium ATCC14028 wild type and ΔrpoN mutant cultures containing plasmid pPBHP192 expressing protein DctD250

2017-03-27 | GSE75178 | GEO

Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

Project description:Salmonella Typhimurium ATCC14028 fimZ mutant

| PRJNA398056 | ENA

ChIP-chip of RNA Polymerase (RNAP) and RpoD in Salmonella enterica serovar Typhimurium strain SL1344

Project description:ChIP-on-chip analysis of RNAP and RpoD binding to the Salmonella enterica serovar Typhimurium chromosome demonstrated a high degree of overlap between RNAP and RpoD binding and provided us with important insights into the global distribution of these factors. Furthermore this data was correlated with information on the location of 1873 transcription start sites identified by RNA-Seq technology, thereby providing a detailed transcriptional map of Salmonella Typhimurium.

2012-02-16 | GSE35827 | GEO

Salmonella enterica subsp. Enteric sv. Typhimurium in vivo induced enterocyte transcriptional response

Project description:1-day-old C57BL/6 mice were left untreated (co) or orally infected with 10E2 CFU wildtype (wt) or delta invC SPI1 mutant Salmonella Typhimurium (ATCC14028). Four biological replicates obtained from individual animals were exmained; each group contained animals from at least 2 different litters. On day 4 p.i., animals were sacrificed and intestinal epithelial cells were isolated from total small intestine (protocol according to: Lotz et al., J. Exp. Med. 2006). Total RNA was isolated by TriZol and its purity was examined using a Bioanalyzer. We used microarrays to detail the global gene expression in primary total isolated intestinal epithelial cells.

2014-09-01 | GSE51160 | GEO

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