Project description:Here we report the massively parallel cDNA sequencing (RNA-seq) analysis performed using high throughput sequencing of wild type (DB110) and toxR (TW30) mutant strains of the deep-sea bacterium Photobacterium profundum. ToxR is a transmembrane DNA-binding protein first discovered in Vibrio cholerae and able to regulate numerous genes involved in virulence. In P. profundum the abundance and activity of the same protein is influenced by hydrostatic pressure and is able to regulate genes in a pressure-dependent manner. To better characterize the ToxR regulon, we have compared the genes differentially expressed in response to pressure changes with those whose expression is altered between wild type and toxR mutant strains.

2012-12-22 | GSE38259 | GEO

Microbacterium proteolyticum strain:DSM 27100 | isolate:DSM 27100

Project description:Microbacterium proteolyticum DSM 27100 genome sequencing

| PRJNA572480 | ENA

Microbacterium proteolyticum strain:CECT 8356 | isolate:CECT 8356

Project description:Microbacterium proteolyticum CECT 8356 genome sequencing

| PRJNA546708 | ENA

Photobacterium toruni

Project description:Photobacterium toruni Genome sequencing

| PRJNA858486 | ENA

Photobacterium phosphoreum

Project description:Photobacterium phosphoreum Genome sequencing