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Rhopilema esculentum

ABSTRACT: Rhopilema esculentum transcriptome sequencing

PROVIDER: PRJNA318143 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR3360901_1.fastq.gz	Fastqsanger.gz
	SRR3360901_2.fastq.gz	Fastqsanger.gz
	SRR3360955_1.fastq.gz	Fastqsanger.gz
	SRR3360955_2.fastq.gz	Fastqsanger.gz
	SRR3360928_1.fastq.gz	Fastqsanger.gz

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Chromosome-level reference genome of the jellyfish Rhopilema esculentum.

Project description:BACKGROUND:Jellyfish belong to the phylum Cnidaria, which occupies an important phylogenetic location in the early-branching Metazoa lineages. The jellyfish Rhopilema esculentum is an important fishery resource in China. However, the genome resource of R. esculentum has not been reported to date. FINDINGS:In this study, we constructed a chromosome-level genome assembly of R. esculentum using Pacific Biosciences, Illumina, and Hi-C sequencing technologies. The final genome assembly was ?275.42 Mb, with a contig N50 length of 1.13 Mb. Using Hi-C technology to identify the contacts among contigs, 260.17 Mb (94.46%) of the assembled genome were anchored onto 21 pseudochromosomes with a scaffold N50 of 12.97 Mb. We identified 17,219 protein-coding genes, with an average CDS length of 1,575 bp. The genome-wide phylogenetic analysis indicated that R. esculentum might have evolved more slowly than the other scyphozoan species used in this study. In addition, 127 toxin-like genes were identified, and 1 toxin-related "hub" was found by a genomic survey. CONCLUSIONS:We have generated a chromosome-level genome assembly of R. esculentum that could provide a valuable genomic background for studying the biology and pharmacology of jellyfish, as well as the evolutionary history of Cnidaria.

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