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Musa acuminata

ABSTRACT: Transcriptome profiling of banana in response to growth-promoting rhizobacteria

PROVIDER: PRJNA319058 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR3406500_1.fastq.gz	Fastqsanger.gz
	SRR3406500_2.fastq.gz	Fastqsanger.gz
	SRR3406510_1.fastq.gz	Fastqsanger.gz
	SRR3406510_2.fastq.gz	Fastqsanger.gz
	SRR3406501_1.fastq.gz	Fastqsanger.gz

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Transcriptome analysis of banana (Musa acuminata) in response to low-nitrogen stress

Project description:Nitrogen (N) is an abundant and essential macronutrient for plants growth and development processes, especially for the huge banana trees with high biomass. In this paper, we studied the response of banana resists to low N stress ueing Illumina RNA-Seq technology, and analyzed the DEGs associated with the absorption, transport, and ulitilize of nitrogen.

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Project description:'Systems-wide' approaches such as microarray RNA-profiling are ideally suited to the study of the complex, overlapping responses of plants to biotic and abiotic stresses. However, commercial microarrays are only available for a limited number of plant species and development costs are so substantial as to be prohibitive for most research groups. Here, we evaluate the use of cross-hybridisation to Affymetrix oligonucleotide GeneChip microarrays to profile the response of the banana (Musa sp.) leaf transcriptome to drought stress using a genomic DNA (gDNA)-based probe-selection strategy to improve the efficiency of detection of differentially expressed Musa transcripts. GeneChip analyses were performed to profile the response of the banana (Musa sp.) leaf transcriptome to drought stress using a genomic DNA (gDNA)-based probe-selection strategy to improve the efficiency of detection of differentially expressed Musa transcripts.

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