Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Trichophyton mentagrophytes

ABSTRACT: Transcriptome Sequencing and Gene Expression Analysis of Trichophyton mentagrophytes under Different Culture Conditions

PROVIDER: PRJNA319476 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3436790_1.fastq.gz	Fastqsanger.gz
	SRR3436790_2.fastq.gz	Fastqsanger.gz
	SRR3436782_1.fastq.gz	Fastqsanger.gz
	SRR3436782_2.fastq.gz	Fastqsanger.gz
	SRR3436783_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Trichophyton mentagrophytes

Project description:Transcriptome Sequencing and Gene Expression Analysis of Trichophyton mentagrophytes under Different Culture Conditions

| PRJNA320644 | ENA

Dual RNA-seq of Trichophyton mentagrophytes complex

Project description:We report the application of dual RNA-sequencing technology for high-throughput profiling of histone modifications in HaCat cells and Trichophyton mentagrophytes complex.For co-culture assays, a ratio of 2.5×105 cells/mL of keratinocytes to 2.5×105 conidia/mL of T. mentagrophytes, T. interdigitale, and T. tonsurans solution were used (MOI=1). The experiment was carried out for 24 h in a humidified incubator maintained at 37 ºC . We used dual RNA-seq to study the different host immune responses against the T. mentagrophytes complex and we the transcriptional profiles of differentially expressed genes in dermatophytes.

2022-08-19 | GSE199307 | GEO

Trichophyton mentagrophytes

Project description:Trichophyton mentagrophytes overview

| PRJNA320656 | ENA

Transcriptome Sequencing and Gene Expression Analysis of Trichophyton mentagrophytes under Different Culture Conditions

Project description:Our study provides considerable gene expression information of Trichophyton mentagrophytes at the transcriptional level, which will help accelerate the research on the antifungal medicine development. Additionally, we have demonstrated the feasibility of using the Illumina sequencing based DGE system for gene expression profiling, and have shed new light on functional studies of the genes involved in antifungal mechanisms of berberine hydrochloride and clotrimazole.

2019-03-20 | GSE80604 | GEO

Trichophyton mentagrophytes strain:28185

Project description:Trichophyton mentagrophytes strain:28185 Transcriptome or Gene expression

| PRJNA356953 | ENA

Trichophyton mentagrophytes strain:TIMM 2789

Project description:Trichophyton mentagrophytes TIMM 2789 genome project

| PRJDB6558 | ENA

Trichophyton mentagrophytes

Project description:Trichophyton interdigitale overview

| PRJNA186917 | ENA

Trichophyton

Project description:Species boundaries in human skin pathogens Trichophyton mentagrophytes and T. interdigitale

| PRJNA482248 | ENA

Transcriptome profile of T. mentagrophytes exposed to different drugs

Project description:Dermatophytosis is a common and relevant zoonotic disease of public health concern, Various antifungal compounds, including clotrimazole, terbinafine, and ketoconazole have been reported for the treatment of dermatophytosis,In the present study,Transcriptome profile of T. mentagrophytes exposed to different drugs was performed in order to find the important drug antifungal active point.

2021-04-13 | GSE162331 | GEO

NMR study of the galactomannans of Trichophyton mentagrophytes and Trichophyton rubrum.

Project description:Around 90% of chronic dermatophyte infections are caused by the fungi Trichophyton mentagrophytes and Trichophyton rubrum. One of the causes of the chronic infection resides in the immunosuppressive effects of the cell-wall components of these organisms. Therefore we have attempted to identify the chemical structure of galactomannan, one of the major cell-wall components. The cell-wall polysaccharides secreted by T. mentagrophytes and T. rubrum were isolated from the culture medium and fractionated into three subfractions by DEAE-Sephadex chromatography. Analysis of each subfraction by NMR indicated that there are two kinds of polysaccharides present, i.e. mannan and galactomannan. The mannan has a linear backbone consisting of alpha1,6-linked mannose units, with alpha1,2-linked mannose units as side chains. The core mannan moiety of the galactomannan was analysed by a sequential NMR assignment method after removing the galactofuranose units by acid treatment. The result indicates that the mannan moiety has a linear repeating structure of alpha1,2-linked mannotetraose units connected by an alpha1,6 linkage. The H-1 signals of the two intermediary alpha1, 2-linked mannoses of the tetraose unit showed a significant upfield shift (Deltadelta=0.05-0.08 p.p.m.), due to the steric effect of an alpha1,6-linked mannose unit. The attachment point of the galactofuranose units was determined at C-3 of the core mannan by the assignment of the downfield-shifted 13C signals of the galactomannan compared with those of the acid-modified product. In these galactomannans there were no polygalactofuranosyl chains which have been found in Penicillium charlesii and Aspergillus fumigatus.

| S-EPMC1218309 | biostudies-other

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data