Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhizoctonia solani AG1 IA strain and Zoysia japonica

ABSTRACT: De novo transcriptome analysis of Rhizoctonia solani AG1 IA strain early invasion in Zoysia japonica root Transcriptome

PROVIDER: PRJNA321370 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3501560_1.fastq.gz	Fastqsanger.gz
	SRR3501560_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Rhizoctonia solani strain:AG1-IA

Project description:Rhizoctonia solani strain:AG1-IA Genome sequencing

| PRJNA841755 | ENA

Rhizoctonia solani AG-1 IA strain:AG1-IA

Project description:Rhizoctonia solani AG-1 IA strain:AG1-IA Transcriptome or Gene expression

| PRJNA73789 | ENA

The pangenome analysis of the soil-borne fungal phytopathogen Rhizoctonia solani and development of a comprehensive web resource: RsolaniDB

Project description:Rhizoctonia solani Kühn is a soilborne basidiomycetous fungus that causes significant damage to many economically important crops. R. solani isolates are classified into 13 Anastomosis Groups (AGs) with interspecific subgroups having distinctive morphology, pathogenicity and wide host range. However, the genetic factors that drive the unique fungal pathology are still not well characterized due to the limited number of available annotated genomes. Therefore, we performed genome sequencing, assembly, annotation and functional analysis of 13 R. solani isolates covering 7 AGs and selected subgroups (AG1-IA, AG1-IB, AG1-IC, AG2-2IIIB, AG3-PT, AG3-TB, AG4-HG-I, AG5, AG6, and AG8). Here, we report a pangenome comparative analysis of 13 R. solani isolates covering important groups to elucidate unique and common attributes associated with each isolate, including molecular factors potentially involved in determining AG-specific host preference. Finally, we present the largest repertoire of annotated R. solani genomes, compiled as a comprehensive and user-friendly database, viz. RsolaniDB. Since 7 genomes are reported for the first time, the database stands as a valuable platform for formulating new hypotheses by hosting annotated genomes, with tools for functional enrichment, orthologs and sequence analysis, currently not available with other accessible state-of-the-art platforms hosting Rhizoctonia genome sequences.

2020-10-03 | E-MTAB-9588 | biostudies-arrayexpress

Rhizoctonia solani AG-1 IA

Project description:Rhizoctonia solani AG-1 IA overview

| PRJNA187531 | ENA

Rhizoctonia solani strain:BRS11

Project description:Rhizoctonia solani AG1-IA BRS11 Raw sequence reads

| PRJNA417898 | ENA

Rhizoctonia solani strain:BRS13

Project description:Rhizoctonia solani AG1-IA BRS13 Raw sequence reads

| PRJNA417899 | ENA

Rhizoctonia solani AG-1 IA

Project description:Rhizoctonia solani AG-1 IA Genome sequencing

| PRJNA244967 | ENA

Evolution and Pathogenic Mechanism of Rice Sheath Blight Pathogen

Project description:Analysis of RNA expression of Rhizoctonia solani AG1 IA. mRNA-seq of R. solani AG1 IA at 6 timepoints during the plant infection were sequenced. Cufflinks was used for calculating expected fragments per kilobase of transcript per million fragments sequenced (FPKM) values. Expression and regulation were identified. Analysis provides suggestion for discovering novel effectors and understanding pathogen factors.

2013-01-28 | GSE32577 | GEO

Rhizoctonia solani AG-1 IA

Project description:Rhizoctonia solani AG-1 IA Raw sequence reads

| PRJNA377841 | ENA

Rhizoctonia solani AG-1 IA

Project description:Rhizoctonia solani AG-1 IA Transcriptome or Gene expression

| PRJNA74497 | ENA