Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oceanisphaera psychrotolerans strain:LAM-WHM-ZC

ABSTRACT: Oceanisphaera psychrotolerans strain:LAM-WHM-ZC Genome sequencing and assembly

PROVIDER: PRJNA338900 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	MDKE01.dat.gz	Other
	MDKE01.fasta.gz	Fasta.gz
	MDKE01.master.dat	Other
	MDKE01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

RNA-seq of Pseudarthrobacter psychrotolerans YJ56: on temperature

Project description:Comparison for gene expression of Pseudarthrobacter psychrotolerans YJ56: grown on 13℃ or 25℃

2021-02-25 | GSE167471 | GEO

Oceanisphaera profunda strain:SM1222

Project description:Oceanisphaera profunda strain:SM1222 Genome sequencing and assembly

| PRJNA387128 | ENA

Oceanisphaera avium strain:AMac2203

Project description:Oceanisphaera avium strain:AMac2203 Genome sequencing and assembly

| PRJNA387127 | ENA

Oceanisphaera arctica strain:V1-41

Project description:Oceanisphaera arctica strain:V1-41 Genome sequencing and assembly

| PRJNA276165 | ENA

Oceanisphaera sp. DM8

Project description:Oceanisphaera sp. DM8 Genome sequencing and assembly

| PRJNA713839 | ENA

Transcript profiling of Lymphangioleiomyomatosis (LAM) nodules in Human Patients

Project description:Lymphangioleiomyomatosis (LAM) is characterized by cystic lung destruction caused by smooth, muscle-like LAM cells which have mutations in the tumor suppressor genes Tuberous Sclerosis Complex (TSC) 1 or 2, and the capacity to metastasize. Since chemokines and their receptors function in chemotaxis of metastatic cells, we hypothesized that LAM cells may be recruited by chemokine(s) in the lung. Quantification of 25 chemokines in bronchoalveolar lavage fluid from LAM patients and healthy volunteers revealed that concentrations of MCP-1/CCL2, GROa/CXCL1 and ENA-78/CXCL5 were significantly higher in samples from LAM patients than healthy volunteers. In this transcript analysis, expression of chemokine and chemokine receptor mRNA in LAM cells differed from those in melanoma and smooth muscle cells. Subsequent immunohistochemistry of lung sections from 30 LAM patients confirmed protein expression of chemokines and these receptors varied among LAM patient and differed from that seen in breast cancer and melanoma cells. . In vitro, MCP-1/CCL2 induced selective migration of cells showing loss of heterozygosity of TSC2 from a heterogeneous populations of cells grown from explanted LAM lungs. In addition, the frequencies of single-nucleotide polymorphisms in the MCP-1 gene promoter region differed significantly in LAM patients and healthy volunteers (p=0.018), and one polymorphism was associated significantly more frequently with the decline of lung function. These observations are consistent with the notion that chemokines such as MCP-1 may serve to specify site of LAM cell metastasis. Keywords: Human patient sample comparison with cell lines The study is of case/control design with biological replication. Biopsies of nodules from 14 LAM patients (cases) are compared with cultured cell lines (controls) with similar properties.

2008-12-30 | E-GEOD-12027 | biostudies-arrayexpress

Pseudomonas psychrotolerans strain:SDS18

Project description:Pseudomonas psychrotolerans strain:SDS18 Genome sequencing and assembly

| PRJNA360021 | ENA

Methylovulum psychrotolerans strain:Sph1

Project description:Methylovulum psychrotolerans strain:Sph1 Genome sequencing and assembly

| PRJNA418066 | ENA

Methylovulum psychrotolerans strain:S1L

Project description:Methylovulum psychrotolerans strain:S1L Genome sequencing and assembly

| PRJNA726368 | ENA

Pseudomonas psychrotolerans

Project description:Pseudomonas psychrotolerans strain PRS08-11306 Genome sequencing and assembly