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Sclerotinia trifoliorum strain:06CWM-G22

ABSTRACT: Sclerotinia trifoliorum strain:06CWM-G22 Genome sequencing and assembly

PROVIDER: PRJNA342711 | ENA |

REPOSITORIES: ENA

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Sclerotinia trifoliorum

Project description:Sclerotinia trifoliorum overview

| PRJNA83869 | ENA

Global transcriptome of the fungal pathogen Sclerotinia sclerotiorum (strain 1980) during the colonization of six plant species - Global transcriptome of S. sclerotiorum and S. trifoliorum during growth on camalexin

Project description:The host range of parasites is an important factor in assessing the dynamics of disease epidemics. The evolution of pathogens to accommodate new hosts may lead to host range expansion, a process the molecular bases of which are largely enigmatic. The fungus Sclerotinia sclerotiorum parasitizes more than 400 plant species from diverse eudicot families while its close relative, S. trifoliorum, is restricted to plants from the Fabaceae family. We analyzed S. sclerotiorum global transcriptome reprogramming on hosts from six botanical families and reveal a flexible, host-specific transcriptional program driven by core and host-response co-expression (SPREx) gene clusters. We generated a chromosome-level genome assembly for S. trifoliorum and found near-complete gene space conservation in broad and narrow host range Sclerotinia species. However, S. trifoliorum showed increased sensitivity to the Brassicaceae defense compound camalexin. Inter-specific transcriptome analyses revealed a lack of transcriptional response to camalexin in S. trifoliorum and provide evidence that cis-regulatory variation associates with the genetic accommodation of Brassicaceae in the Sclerotinia host range. Our work demonstrates adaptive plasticity of a broad host range pathogen with specific responses to different host plants and demonstrates the co-existence of signatures for generalist and polyspecialist life styles in the genome of a plant pathogen. We reason that this mechanism enables the emergence of new disease with no or limited gene flow between strains and species, and could underlie the emergence of new epidemics originating from wild plants in agricultural settings.

2021-07-20 | GSE159792 | GEO

Sclerotinia trifoliorum 06CWM-G47

Project description:Sclerotinia trifoliorum 06CWM-G47 Transcriptome or Gene expression

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Sclerotinia trifoliorum

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Project description:Lupin-infecting Sclerotinia sclerotiorum - Genome sequencing and assembly

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Sclerotinia sclerotiorum strain:PPRI 4301 | isolate:Sclerotinia sclerotiorum

Project description:Sclerotinia sclerotiorum strain:PPRI 4301 | isolate:Sclerotinia sclerotiorum Raw sequence reads

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