Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Drosophila erecta

ABSTRACT: Drosophila erecta embryonic development RAMPAGE time series

PROVIDER: PRJNA351835 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4733680_1.fastq.gz	Fastqsanger.gz
	SRR4733680_2.fastq.gz	Fastqsanger.gz
	SRR4733690_1.fastq.gz	Fastqsanger.gz
	SRR4733690_2.fastq.gz	Fastqsanger.gz
	SRR4733681_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 46

Similar Datasets

Drosophila ananassae

Project description:Drosophila ananassae embryonic development RAMPAGE time series

| PRJNA351809 | ENA

Drosophila simulans

Project description:Drosophila simulans embryonic development RAMPAGE time series

| PRJNA351832 | ENA

Drosophila pseudoobscura

Project description:Drosophila pseudoobscura embryonic development RAMPAGE time series

| PRJNA351829 | ENA

Drosophila species embryonic development RAMPAGE time series

Project description:Drosophila species embryonic development RAMPAGE time series

| PRJNA351836 | ENA

Drosophila melanogaster

Project description:Drosophila melanogaster embryonic development RAMPAGE time series (Biological replicate #2)

| PRJNA351827 | ENA

Drosophila erecta

Project description:The fruit fly Drosophila erecta is a member of the melanogaster group of the subgenus Sophophora

| PRJNA12660 | ENA

Drosophila melanogaster transcriptome life cycle

Project description:Time course analysis series in Development of the transcriptome from Drosophila melanogaster using the Heidelberg FlyArray. All stages were hybridized against embryonic stage 0-4 h as reference control. Keywords: time-course

2003-12-31 | GSE695 | GEO

Drosophila erecta strain:TSC#14021-0224.01

Project description:Whole genome shotgun (WGS) sequencing of Drosophila erecta

| PRJNA12661 | ENA

Drosophila erecta embryonic development RAMPAGE time series

Project description:Multicellular development is largely determined by transcriptional regulatory programs that orchestrate the expression of thousands of protein-coding and noncoding genes. To decipher the genomic regulatory code that specifies these programs, and to investigate globally the developmental relevance of noncoding transcription, we profiled genome-wide promoter activity throughout embryonic development in 5 Drosophila species. We show that core promoters, generally not thought to play a significant regulatory role, in fact impart broad restrictions on the developmental timing of gene expression on a genome-wide scale. We propose a hierarchical model of transcriptional regulation during development in which core promoters define broad windows of opportunity for expression, by defining a limited range of transcription factors from which they are able to receive regulatory inputs. This two-tiered mechanism globally orchestrates developmental gene expression, including noncoding transcription on a scale that defies our current understanding of ontogenesis. Indeed, noncoding transcripts are far more prevalent than ever reported before, with ~4,000 long noncoding RNAs expressed during embryogenesis. Over 1,500 are functionally conserved throughout the melanogaster subgroup, and hundreds are under strong purifying selection. Overall, this work introduces a hierarchical model for the developmental regulation of transcription, and reveals the central role of noncoding transcription in animal development.

2017-12-19 | GSE89304 | GEO

Profiling of transcription start site expression in Drosophila and the human K562 cell line using RAMPAGE

Project description:This SuperSeries is composed of the following subset Series: GSE36200: RAMPAGE dataset for the human K562 cell line GSE36212: Promoter activity profiling throughout the Drosophila life cycle reveals role of transposons in regulatory innovation Refer to individual Series

2012-08-29 | E-GEOD-36213 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data