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Sand metagenome

ABSTRACT: desert sand Targeted loci environmental

PROVIDER: PRJNA352946 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR5024460.fastq.gz	Fastqsanger.gz
	SRR5024492.fastq.gz	Fastqsanger.gz
	SRR5024493.fastq.gz	Fastqsanger.gz
	SRR5024464.fastq.gz	Fastqsanger.gz
	SRR5024494.fastq.gz	Fastqsanger.gz

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Comparison of cultured and sand fly-derived promastigotes by means of RNA-Seq

Project description:A laboratory colony of Phlebotomus perniciosus sand flies was maintained. Sand flies were infected with cultured Leishmania infantum promastigotes in stationary phase. Ten infected sand flies were dissected after 5 days and promastigotes within the gut pooled. The cells were immediately washed in PBS once and lysed in TRIzol reagent (Life Technologies). RNA isolation was completed according to the manufacturer's instructions, obtaining 63ng. RNA-seq libraries were generated using the spliced leader sequence for second strand synthesis (Cuypers et al., 2017; Haydock et al., 2015), thus allowing for specific amplification of sequences from L. infantum promastigotes, thus avoiding contamination with material from the sand fly gut. Single-end sequencing was performed in an Illumina HiSeq2500 instrument and data analysis was conducted using bowtie2, samtools, featureCounts and Geneious. The main findings are: i) substantial differences in differential gene expression between sand fly-derived (sfPro) and cultured (acPro) promastigotes; and ii) over-expression of genes involved in metacyclogenesis in sfPro vs. acPro, including gp63 genes, autophagy genes, etc.

2018-08-15 | GSE102668 | GEO

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