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Plant metagenome

ABSTRACT: Eucalyptus roots microbiome under different management conditions

PROVIDER: PRJNA360242 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR5146430.fastq.gz	Fastqsanger.gz
	SRR5146431.fastq.gz	Fastqsanger.gz
	SRR5146433.fastq.gz	Fastqsanger.gz
	SRR5146434.fastq.gz	Fastqsanger.gz
	SRR5146435.fastq.gz	Fastqsanger.gz

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Elevated carbon dioxide alters the interaction between Eucalyptus grandis and Pisolithus microcarpus through a complex shift in the root transcriptome

Project description:Illumina HiSeq technology was used to generate mRNA profiles from in vitro Eucalyptus grandis roots interacting with two different Pisolithus microcarpus strains (SI-9 and SI-12) and under two different CO2 concentrations (400 and 650 ppm) . Control roots or ectomycorrhizal root tips were harvested after 1 month and used for RNA extraction. Paired-end (2X150bp) reads were generated and aligned to Eucalyptus grandis transcripts (http://www.phytozome.net/; primarytranscripts only) using CLC Genomics Workbench 6.

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