Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hypsibius dujardini strain:Z151

ABSTRACT: Hypsibius dujardini strain:Z151 Genome sequencing and assembly

PROVIDER: PRJNA360553 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	MTYJ01.dat.gz	Other
	MTYJ01.fasta.gz	Fasta.gz
	MTYJ01.master.dat	Other
	SRR5179573.fastq.gz	Fastqsanger.gz
	SRR5179577_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Hypsibius dujardini

Project description:Hypsibius dujardini Genome sequencing and assembly

| PRJNA298443 | ENA

Hypsibius dujardini strain:ED

Project description:Hypsibius dujardini strain:ED Genome sequencing

| PRJEA78171 | ENA

Hypsibius dujardini strain:Sciento

Project description:Hypsibius dujardini strain:Sciento Genome sequencing and assembly

| PRJNA309530 | ENA

Hypsibius dujardini strain:Z151

Project description:Hypsibius dujardini strain:Z151 Genome sequencing and assembly

| PRJNA360553 | ENA

RNA-Seq analysis of developmental, juvenile, and anhydrobiotic stages of Hypsibius dujardini and Ramazzottius varieornatus

Project description:Limno-terrestrial tardigrades enter a state called anhydrobiosis when exposed to desiccation, and acquire tolerance against various extreme environments. The anhydrobiotic tardigrade Hypsibius dujardini, is a non-pigmented tardigrade easy to culture and RNAi method have been established, therefore making it a model tardigrade for tardigrade molecular research. Previous genome assemblies of this tardigrade had increased size due to heterozygosity. Here, we have sequenced the genome of H. dujardini using single individual Illumina DNA-Seq data and PacBio long read data, and employed a heterozygosity aware assembly method to assemble a near-complete high quality genome. In order to annotate the genome with gene predictions, we conducted RNA-Sequencing of various stages of developmental, juvenile, adult, and anhydrobiotic stage H. dujardini and Ramazzottius varieornatus, a tardigrade capable of rapid anhydrobiosis entry, and used these data for gene prediction with BRAKER v1.9 or differential gene expression analysis of the active and anhydrobiotic stages.

2017-02-28 | GSE94295 | GEO

Hypsibius dujardini

Project description:Hypsibius dujardini high resolution developmental transcriptomic time-course

| PRJNA272543 | ENA

The genome of Hypsibius dujardini

Project description:The genome of Hypsibius dujardini

| PRJEB11910 | ENA

Hypsibius dujardini strain:Z151

Project description:Genome and transcriptome sequencing from a single animal of Hypsibius dujardini

| PRJDB4575 | ENA

Hypsibius dujardini strain:Z151

Project description:Comparative transcriptomics in an anhydrobiotic tardigrade, Hypsibius dujardini, during desiccation treatment