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Bacillus subtilis strain:NCIB 3610

ABSTRACT: Bacillus subtilis NCIB 3610

PROVIDER: PRJNA377766 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR5319485_subreads.fastq.gz	Fastqsanger.gz
	SRR5322374_subreads.fastq.gz	Fastqsanger.gz
	GCA_002055965.1_sequence_report.txt	Txt

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Similar Datasets

Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10

Project description:Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 Genome sequencing

| PRJNA242645 | ENA

Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10

Project description:Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 Genome sequencing

| PRJNA542344 | ENA

Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10

Project description:Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 Genome sequencing and assembly

| PRJNA509107 | ENA

Proteomic response of Bacillus subtilis 3610 to nanoparticles exposition

Project description:The natural biotope of Bacillus subtilis is the upper layer of soil where it grows as a biofilm. To mimic this physiological development and study the impact of nanoparticles during the formation of a biofilm in a contaminated soil, we have studied the proteomic response of the ancestral strain Bacillus subtilis 3610, which is able to form biofilm contrary to the 168 laboratory strain. The bacteria were grown on soft agar plates containing n-ZnO, n-TiO2 or ZnSO4 metal ion.

2018-10-24 | PXD006444 | Pride

Undomesticated Bacillus subtilis RemA regulon

Project description:Transcriptional profiling of Bacillus subtilis str 3610 cells comparing sinR-/epsH- cells to sinR-/epsH-/remA- cells in MSgg Medium at optical density (600nm) of 1.0

2013-05-29 | GSE47409 | GEO

Transcriptome sequencing data analysis of Bacillus subtilis NCIB 3610 wild-type strain, tmRNA mutant strain and MB revertant strain

Project description:In our study, we found that lack of tmRNA affects the biofilm formation in Bacillus subtilis, which has important research significance. Then, we obtained a revertant strain MB from tmRNA mutant strain. And MB strain could restore biofilm production capacity. Therefore, the transcriptomes of the three strains were sequenced. Based on the statistical analysis of gene expression (P < 0.05), there were 756 genes up regulated while 992 genes down regulated by at least two folds when comparing TM to WT. Secondly, there were 974 genes up regulated while 563 genes down regulated by at least two folds when comparing MB to TM. And there were 179 genes up regulated while 307 genes down regulated by at least two folds when comparing MB to WT.

2022-08-03 | GSE199151 | GEO

Complete Genome Sequence of Undomesticated Bacillus subtilis Strain NCIB 3610.

Project description:Bacillus subtilis is a Gram-positive bacterium that serves as an important experimental system. B. subtilis NCIB 3610 is an undomesticated strain that exhibits phenotypes lost from the more common domesticated laboratory strains. Here, we announce the complete genome sequence of DK1042, a genetically competent derivative of NCIB 3610.

| S-EPMC5477328 | biostudies-literature

DNA sequencing coverage in wild type and RNase H deficient Bacillus subtilis cells [2]

Project description:RNA-DNA hybrids form throughout the chromosome during normal cell growth and under stress conditions. When left unresolved, RNA-DNA hybrids can slow replication fork progression, cause DNA breaks, increase mutagenesis, and reduce gene expression. To remove hybrids, all organisms use ribonuclease H (RNase H) to specifically degrade the RNA portion of RNA-DNA hybrids. Here we show that, in addition to chromosomally encoded RNase HII and RNase HIII, Bacillus subtilis NCIB 3610 encodes a previously uncharacterized RNase HI protein, RnhP, on the endogenous plasmid pBS32. Like other RNase HI enzymes, RnhP incises Okazaki fragments, ribopatches, and a complementary RNA-DNA hybrid. We show that while chromosomally encoded RNase HIII is required for pBS32 hyper-replication, RnhP compensates for loss of RNase HIII activity on the chromosome. Consequently, loss of RnhP and RNase HIII impairs bacterial growth. We show that the decreased growth rate can be explained by laggard replication fork progression near the terminus region of the right replichore resulting in SOS-dependent inhibition of cell division. We conclude that B. subtilis NCIB 3610 encodes functional RNase HI, HII, and HIII, and pBS32-encoded RNase HI contributes to replication fork progression and chromosome stability while RNase HIII is important for chromosome stability and plasmid hyper-replication.

2020-07-16 | GSE154585 | GEO

DNA sequencing coverage in wild type and RNase H deficient Bacillus subtilis cells [1]

2020-04-30 | GSE149552 | GEO

Undomesticated Bacillus subtilis SlrA regulon: wild-type vs two copies of slrA

Project description:Transcriptional profiling of Bacillus subtilis str 3610 cells comparing wild-type to cells containing two copies of the gene slrA.

2012-02-02 | GSE35456 | GEO

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