Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aphanomyces astaci isolate:Pc

ABSTRACT: Aphanomyces astaci isolate:Pc Genome sequencing and assembly

PROVIDER: PRJNA378874 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	MZMZ02.dat.gz	Other
	MZMZ02.fasta.gz	Fasta.gz
	MZMZ02.master.dat	Other
	MZMZ01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Aphanomyces astaci

Project description:Aphanomyces astaci overview

| PRJNA187538 | ENA

Aphanomyces astaci strain:APO3

Project description:Aphanomyces astaci Genome Project

| PRJNA187372 | ENA

Aphanomyces astaci strain:AP03

Project description:Aphanomyces astaci Transcriptome Project

| PRJNA187375 | ENA

Aphanomyces astaci genome

Project description:Genome sequence of the oomycete Aphanomyces astaci

| PRJEB24021 | ENA

Aphanomyces astaci strain:E

Project description:Aphanomyces astaci strain:E Genome sequencing and assembly

| PRJNA551417 | ENA

Mitochondrial genomes and comparative genomics of Aphanomyces astaci and Aphanomyces invadans.

Project description:The genus Aphanomyces (Saprolegniales, Oomycetes) includes species with a variety of ecologies from saprotrophs to plant and animal parasites. Two important species in this genus are A. astaci, the cause of crayfish plague and its close relative, A. invadans, which causes the epizootic ulcerative syndrome on fish. In this study, we have assembled and annotated the mitochondrial (mt) genomes of A. astaci and A. invadans from the whole genome shotgun sequence reads (PRJNA187372; PRJNA258292, respectively). The assembly was generated from A. astaci Pc-genotype strain APO3 and A. invadans strain NJM9701. The sizes of the mtDNAs were 49,489 bp and 49,061 bp for A. astaci and A. invadans, respectively. The species shared similar genetic content and organization encoding 35 proteins, two ribosomal RNAs, three putative open reading frames and 33 transfer RNAs of 19 amino acids for peptide synthesis. Both species also had a large inverted repeat region (LIR) of approximately 12 kb, the LIR contained large and small ribosomal RNAs and eight protein coding genes. These annotated mt genomes serve as a valuable genetic backbone for further development of diagnostic methods and phylogenetic and migration studies of the animal parasitic species of Aphanomyces.

| S-EPMC5093560 | biostudies-literature

Cicada isolate:PC

Project description:Cicada isolate:PC Raw sequence reads

| PRJNA343150 | ENA

Aphanomyces euteiches

Project description:Aphanomyces euteiches Genome sequencing

| PRJNA816123 | ENA

Timema cristinae isolate:10poolfem-genome-2009-PC

Project description:Timema cristinae isolate:10poolfem-genome-2009-PC Genome sequencing and assembly

| PRJNA357256 | ENA

Project description:Aphanomyces astaci Sequencing Project

| PRJNA187377 | ENA