Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bos taurus

ABSTRACT: Bos taurus and Bos indicus Genome sequencing

PROVIDER: PRJNA379859 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5507190_1.fastq.gz	Fastqsanger.gz
	SRR5507190_2.fastq.gz	Fastqsanger.gz
	SRR5507200_1.fastq.gz	Fastqsanger.gz
	SRR5507200_2.fastq.gz	Fastqsanger.gz
	SRR5507210_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 238

Similar Datasets

R. microplus expression profiles of larvae pre-attachment and feeding adult female stages in B. indicus and B. taurus

Project description:Comparative microarray analysis of Rhipicephalus (Boophilus) microplus expression profiles of larvae pre-attachment and feeding adult female stages on Bos indicus and B. taurus cattle Global analysis of gene expression changes in R. microplus during larval, pre-attachment and early adult stages of its life cycle feeding on Bos indicus and Bos taurus cattle were compared using gene expression microarray analysis. Among the 13 601 R. microplus transcripts from BmiGI Version 2 we identified 297 up and 17 down regulated transcripts were differentially expressed between R. microplus feeding on tick resistant cattle [Bos indicus (Brahman)] compared to R. microplus feeding on tick susceptible cattle [Bos taurus (Holstein-Friesian)]. These include genes encoding enzymes involved in primary metabolism, and genes related to stress, defence, cell wall modification, cellular signaling, receptor and cuticle. Microarrays were validated by qRT-PCR analysis of selected transcripts including the validation of three housekeeping genes. The analysis of all tick stages under survey suggested a coordinated regulation of defence proteins, proteases, and protease inhibitors to achieve successful attachment and survival of R. microplus on different host breeds particularly Bos indicus cattle.

2010-07-09 | GSE20605 | GEO

R. microplus expression profiles of larvae pre-attachment and feeding adult female stages in B. indicus and B. taurus

2010-07-09 | E-GEOD-20605 | biostudies-arrayexpress

Epigenome screen suggests DNA methylation may affect beef tenderness through signal transduction in Bos indicus

Project description:Beef tenderness is a complex trait of economic importance for the beef industry. Understanding the genetic and epigenetic mechanisms underlying this trait may help improve the accuracy of breeding programs and deliver a better product quality to consumers. However, little is known about epigenetic effects in the muscle of Bos taurus and their implications in tenderness, and no studies have been conducted in Bos indicus. Therefore, we analyzed Reduced Representation Bisulfite Sequencing (RRBS) to search for differences in the methylation profile of Bos indicus skeletal muscle with extreme values for beef tenderness (tender = 6 animals, tough = 6 animals).

2022-05-27 | GSE190966 | GEO

Bos taurus

Project description:Bos taurus and Bos indicus Genome sequencing and assembly

| PRJNA737584 | ENA

bos indicus, bos taurus

Project description:bos indicus and bos taurus Genome sequencing and assembly

| PRJNA422979 | ENA

Bos taurus breed:Bos taurus indicus

Project description:Etiopian Bos taurus indicus WGS

| PRJNA699084 | ENA

Bos taurus

Project description:Whole-genome sequencing of Chinese Bos taurus and Bos indicus

| PRJNA396672 | ENA

Analysis of copy number variations among Chinese cattle breeds

Project description:Here we describe a genome-wide analysis of copy number variations (CNVs) in Chinese domestic cattle by using array comparative genomic hybridization (array CGH) and quantitative PCR (qPCR). We conducted array CGH analysis on 30 male cattle individuals, animals from consisting of 12 breeds of Bos taurus/Bos indicus, 1 Bos grunniens and and two ones of Bubalus bubalis breeds for with beef, and/or dairy or dual purpose. We identified over 470 candidate CNV regions (CNVRs) in Bos B. taurus/B. indicus; 118 candidate CNV regions (CNVRs) in B. grunniens, 139 CNVRs in B. bubalis. Furthermore, based on the Y haplotypes of B. taurus/ B. indicus, Wwe also identified 69, 337, and 251 candidate CNV regions (CNVRs) in the sub-groups of Y1, Y2 and Y3 haplotypes.

2014-12-30 | GSE47086 | GEO

Bos indicus x Bos taurus

Project description:Bos indicus x Bos taurus overview

| PRJNA413440 | ENA

Bos indicus x Bos taurus

Project description:Bos taurus x Bos indicus overview

| PRJNA294204 | ENA