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Fomitopsis palustris

ABSTRACT: Fomitopsis palustris overview

PROVIDER: PRJNA381829 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	JARAOQ01.dat.gz	Other
	JARAOQ01.fasta.gz	Fasta.gz
	JARAOQ01.master.dat	Other
	MJIM01.dat.gz	Other

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Fomitopsis palustris strain:ATCC 62978

Project description:Fomitopsis palustris strain:ATCC 62978 Genome sequencing and assembly

| PRJNA343720 | ENA

Fomitopsis palustris strain:FFPRI 0507

Project description:Complete mitochondrial genome of the wood-decaying fungus Fomitopsis palustris

| PRJDB5335 | ENA

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris

Project description:To address the question of how photosynthetic bacterium Rhodopseudomonas palustris metabolize lignin derived compound p-coumarate, transcriptomics and quantitative proteomics were combined to characterize gene expression profiles at both the mRNA level and protein level in Rhodopseudomonas palustris grown with succinate, benzoate, and p-coumarate as the carbon source. Keywords: Comparison of transcriptome profiles

2008-05-07 | GSE6221 | GEO

Gene expression patterns of a Rhodopseudomonas palustris ΔregSR strain under photoheterotrophic growth conditions

Project description:The redox-sensing two-component signal transduction system, RegSR, in Rhodopseudomonas palustris has been shown to regulate an uptake hydrogenase in response to varying cellular redox states; however, its role is still largely undefined. Here, we used RNA sequencing to compare gene expression patterns in wild type R. palustris strain CGA010 to a ΔregSR derivative, CGA2023, under varying metabolic conditions. Growth conditions were chosen to utilize the different metabolic capabilites of R. palustris and, thus, present a variety of different redox challenges to the cell.

2021-07-31 | GSE150608 | GEO

Oxalate efflux transporter from the brown rot fungus Fomitopsis palustris.

Project description:An oxalate-fermenting brown rot fungus, Fomitopsis palustris, secretes large amounts of oxalic acid during wood decay. Secretion of oxalic acid is indispensable for the degradation of wood cell walls, but almost nothing is known about the transport mechanism by which oxalic acid is secreted from F. palustris hyphal cells. We characterized the mechanism for oxalate transport using membrane vesicles of F. palustris. Oxalate transport in F. palustris was ATP dependent and was strongly inhibited by several inhibitors, such as valinomycin and NH(4)(+), suggesting the presence of a secondary oxalate transporter in this fungus. We then isolated a cDNA, FpOAR (Fomitopsis palustris oxalic acid resistance), from F. palustris by functional screening of yeast transformants with cDNAs grown on oxalic acid-containing plates. FpOAR is predicted to be a membrane protein that possesses six transmembrane domains but shows no similarity with known oxalate transporters. The yeast transformant possessing FpOAR (FpOAR-transformant) acquired resistance to oxalic acid and contained less oxalate than the control transformant. Biochemical analyses using membrane vesicles of the FpOAR-transformant showed that the oxalate transport property of FpOAR was consistent with that observed in membrane vesicles of F. palustris. The quantity of FpOAR transcripts was correlated with increasing oxalic acid accumulation in the culture medium and was induced when exogenous oxalate was added to the medium. These results strongly suggest that FpOAR plays an important role in wood decay by acting as a secondary transporter responsible for secretion of oxalate by F. palustris.

| S-EPMC2988596 | biostudies-literature

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris

2008-05-07 | E-GEOD-6221 | biostudies-arrayexpress

High-throughput transcriptome sequencing analysis provides insights into preliminary biotransformation mechanism of Rhodopseudomonas palustris treated with alpha-rhamnetin-3-rhamnose

Project description:In this paper, we present the first comparative transcriptome profiles with ARR treated and control of R. palustris. Moreover, putative two ARR biotransformation mechanisms in R. palustris were first given. All of these provided a valuable genomic resource for further studying molecular mechanism of biotransformation and genetic modification of R. palustris.

2018-06-04 | GSE69576 | GEO

Phosphoproteomic analysis of Rhodopseudomonas palustris

Project description:This study is to compare the phosphoproteome of Rhodopseudomonas palustris under photoheterotrophic and chemoheterotrophic states

2012-12-12 | PXD000025 | Pride

Proteomic analysis of Rhodopsedomonas palustris longevity

Project description:Proteomics analysis of Rhodopseudomonas palustris 6 and 20 days after growth arrest.

2019-10-02 | PXD013729 | Pride

Anaerobic degradation of syringic acid by an adapted strain of Rhodopseudomonas palustris

Project description:Rhodopseudomonas palustris strain SA008.1.07 can use syringic acid as sole organic carbon source anaerobically. Grew all anaerobically in various carbon sources: syringic acid, succinate, and p-hydroxybenzoic acid.

2019-11-25 | GSE135630 | GEO

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