Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Landfill metagenome

ABSTRACT: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3 metaG metagenome

PROVIDER: PRJNA404442 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6485349_1.fastq.gz	Fastqsanger.gz
	SRR6485349_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

landfill metagenome

Project description:Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R metaG metagenome

| PRJNA404447 | ENA

landfill metagenome

Project description:Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG metagenome

| PRJNA404445 | ENA

landfill metagenome

Project description:Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG metagenome

| PRJNA404446 | ENA

landfill metagenome

Project description:Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 296A metagenome

| PRJNA502702 | ENA

landfill metagenome

Project description:Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R metagenome

| PRJNA502703 | ENA

landfill metagenome

Project description:Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91 metagenome

| PRJNA518428 | ENA

landfill metagenome

Project description:Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Methane capture system biofilm metagenome

| PRJNA502705 | ENA

Project description:Leachate microbial communities from a municipal landfill in Southern Ontario, Canada in 2017

| PRJNA822698 | ENA

landfill metagenome

Project description:Metagenome assembled genomes targeting viruses from Southern Ontario sanitary landfill leachate

| PRJNA823399 | ENA

Metagenomic analysis revealed higher microbial and functional gene diversities in deep landfill

Project description:Waste decomposition in landfills is a complex and microbe-mediated process. Understanding the microbial community composition and structure is critical for accelerating decomposition and reducing adverse impact on the environment. Here, we examined the microbial communities along with landfill depth and age (LDA) in a sanitary landfill in Beijing, China using 16s rRNA Illumina sequencing and GeoChip 4.6. We found that Clostridiales and Methanofollis were the predominant bacteria and archaea in the present landfill, respectively. Interestingly, in contrast with the decreasing trend of microbial diversity in soil, both phylogenetic and functional diversities were higher in deeper and older refuse in the landfill. Phylogenetic compositions were obviously different in the refuse with the same LDA and such difference is mainly attributed to the heterogeneity of refuse instead of random process. Nevertheless, functional structures were similar within the same LDA, indicating that microbial community assembly in the landfill may be better reflected by functional genes rather than phylogenetic identity. Mantel test and canonical correspondence analysis suggested that environmental variables had significant impacts on both phylogenetic composition and functional structure. Higher stress genes, genes for degrading toxic substances and endemic genes in deeper and older refuse indicated that they were needed for the microorganisms to survive in the more severe environments. This study suggests that landfills are a repository of stress-resistant and contaminant-degrading microorganisms, which can be used for accelerating landfill stabilization and enhancing in situ degradation.

2016-06-15 | GSE68712 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data