Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ustilaginoidea virens strain:UV-GVT

ABSTRACT: Ustilaginoidea virens strain:UV-GVT Genome sequencing and assembly

PROVIDER: PRJNA414696 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	PGGP01.dat.gz	Other
	PGGP01.fasta.gz	Fasta.gz
	PGGP01.master.dat	Other
	PGGP01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Ustilaginoidea virens

Project description:Ustilaginoidea virens Genome sequencing

| PRJNA606646 | ENA

Ustilaginoidea virens strain:P1

Project description:Ustilaginoidea virens strain:P1 Genome sequencing

| PRJNA610522 | ENA

Ustilaginoidea virens

Project description:Ustilaginoidea virens Takahashi IPU010 genome project

| PRJDB3318 | ENA

Genome-wide mapping of H3K4 tri-methylation in ΔUvkmt2 mutant strain of Ustilaginoidea virens

Project description:Epigenetic modification is important for cellular functions. Trimethylation of histone H3 lysine 4 (H3K4me3), which associates with transcriptional activation, is one of the important epigenetic modifications. In this study, the biological functions of UvKmt2-mediated H3K4me3 modification were characterized in Ustilaginoidea virens, which is the causal agent of the false smut disease, one of the most destructive diseases in rice. Phenotypic analyses of the ΔUvkmt2 mutant revealed that UvKMT2 is necessary for growth, conidiation, secondary spore formation, and virulence in U. virens. Immunoblotting and chromatin immunoprecipitation assay followed by sequencing (ChIP-seq) showed that UvKMT2 is required for the establishment of H3K4me3, which covers 1729 genes of the genome in U. virens. In particular, H3K4me3 modification involves in the transcriptional regulation of conidiation-related and pathogenic genes. The down-regulation of UvHOG1 and UvPMK1 genes may be one of the main reasons for the reduced pathogenicity and stresses adaptability of the ∆Uvkmt2 mutant. Overall, H3K4me3, established by histone methyltransferase UvKMT2, contributes to fungal development, secondary spore formation, virulence, and various stresses response through transcriptional regulation in U. virens.

2022-05-25 | GSE203326 | GEO

Ustilaginoidea virens

Project description:Ustilaginoidea virens Raw sequence reads

| PRJNA484293 | ENA

Ustilaginoidea virens

Project description:Ustilaginoidea virens Raw sequence reads

| PRJNA643681 | ENA

Ustilaginoidea virens

Project description:Ustilaginoidea virens Transcriptome or Gene expression

| PRJNA246107 | ENA

Ustilaginoidea virens strain:HWD-2

Project description:Ustilaginoidea virens strain:HWD-2 Genome sequencing

| PRJNA271184 | ENA

Ustilaginoidea virens strain:P1

Project description:Ustilaginoidea virens strain:P1 Transcriptome or Gene expression

| PRJNA242493 | ENA

Ustilaginoidea virens secreted protein LC-MSMS

Project description:This project aims at identifying secreted proteins that modulate plant immunity from Ustilaginoidea virens, which infects rice panicles and is the causal agent of rice false smut (RFS). The identified proteins will be expressed in plant and test whether they can induce cell death, induce plant immunity or suppress plant immunity.

2021-04-23 | PXD024541 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data