Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Globisporangium ultimum DAOM BR748

ABSTRACT: Pythium ultimum DAOM BR748 genome sequencing

PROVIDER: PRJNA42077 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9418969.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Globisporangium ultimum DAOM BR144

Project description:Pythium ultimum DAOM BR144 genome sequencing project

| PRJNA36503 | ENA

Globisporangium ultimum

Project description:Globisporangium ultimum RNA-seq data

| PRJNA540115 | ENA

Globisporangium ultimum var. sporangiiferum BR650

Project description:Globisporangium ultimum var. sporangiiferum BR650 Genome sequencing and assembly

| PRJNA169055 | ENA

Globisporangium iwayamae DAOM BR242034

Project description:Globisporangium iwayamae DAOM BR242034 Genome sequencing and assembly

| PRJNA169054 | ENA

Globisporangium irregulare DAOM BR486

Project description:Globisporangium irregulare DAOM BR486 Genome sequencing and assembly

| PRJNA169053 | ENA

Pythium aphanidermatum DAOM BR444

Project description:Pythium aphanidermatum DAOM BR444 Genome sequencing and assembly

| PRJNA169051 | ENA

Expression array for Trichoderma harzianum T34 and nox1 overexpressed transformant Tnox5 strains in dual culture with Pythium ultimum

Project description:A self-designed Trichoderma high density oligonuclotide (HDO) microarray (Roche-NimbleGen, Inc., Madison, WI, USA) was constructed in a similar way than a previous Trichoderma HDO microarray (Samolski et al., 2009). The microarray was composed of 392,779 60-mer probes designed against 13,443 EST-derived transcripts (Trichochip-1) and the genomes of T. atroviride (11,100 genes) and T. virens (11,643 genes). The Trichochip-1 ESTs were obtained from 28 cDNA libraries from eight different species (representing the biodiversity of this genus: T. harzianum, T. atroviride, T. asperellum, T. viride, T. longibrachiatum, T. virens, T. stromaticum and T. aggresivum), under a wide range of growth conditions, including biocontrol-related conditions and different nutritional situations (VizcaÃno et al., 2006). The Trichochip1 EST database was generated in the TrichoEST project funded by the EU (QLK3-CT-2002-02032). Confrontations were carried out between the T. harzianum T34 or nox1 overexpressed transformant Tnox5 and P. ultimum. Agar plugs cut from the growing edge of a 4-day colony of Trichoderma and Pythium were placed 2 cm from the border on the opposite side of the same petri plates containing PDA covered with sterile cellophane sheets. Dual cultures were allowed to grow at 25 ÂºC and mycelia were collected from the interaction zone in confrontations between P. ultimum and T. harzianum T34 or Tnox5 strains. Seven PDA plates were used for each condition considered and RNAs were extracted and the corresponding cDNAs were use to hybridize by triplicate the Trichoderma HDO microarray.

2010-10-13 | E-GEOD-24630 | biostudies-arrayexpress

Rhizophagus irregularis DAOM 181602=DAOM 197198

Project description:Rhizophagus irregularis DAOM 181602=DAOM 197198 Genome sequencing and assembly

| PRJNA208392 | ENA

Globisporangium ultimum

Project description:A water mold causing root rot

| PRJNA43437 | ENA