Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Psoroptes ovis isolate:Moredun

ABSTRACT: Psoroptes ovis isolate:Moredun Genome sequencing and assembly

PROVIDER: PRJNA432516 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	PQWQ01.dat.gz	Other
	PQWQ01.fasta.gz	Fasta.gz
	PQWQ01.master.dat	Other
	PQWQ01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Psoroptes ovis

Project description:Psoroptes ovis Raw sequence reads

| PRJNA531161 | ENA

Psoroptes ovis

Project description:Psoroptes ovis Transcriptome or Gene expression

| PRJNA317241 | ENA

Transcriptomic analysis of the host circulating leukocyte response to infestation with the ectoparasitic mite Psoroptes ovis

Project description:Sheep (N=6) infested with Psoroptes ovis mites were bled weekly and circulating leukocytes isolated from their whole blood samples. RNA was extracted and processed onto Agilent Bovine Microarrays and differentially expressed genes identified between the following time points (0 (Baseline (pre-infestation)), 1 week, 3 weeks and 6 weeks post-infestation).

2012-04-01 | E-TABM-1193 | biostudies-arrayexpress

Psoroptes ovis

Project description:Psoroptes cuniculi overview

| PRJNA317697 | ENA

Transcriptional analysis of the temporal host response to skin infection with the ectoparasitic mite Psoroptes ovis

Project description:Transcriptional analysis of ovine skin response to infection with the parasitic mite Psoroptes ovis using the Agilent ovine transcriptome microarray platform. The results of statistical analysis (differential gene expression across the time course of infection was determined using a one way-analysis of variance (ANOVA) with a Student-Newman-Keuls (SNK) post-hoc test in Genespring GX 11.0 (Agilent Technologies, UK) comparing each of the 5 time points, non-infected and 1, 3, 6 and 24 hours post infection. Multiple test correction was performed using the Benjamini & Hochberg False Discovery Rate (FDR) procedure with an FDR corrected p-value cut-off set at 0.05) and fold change analysis (Fold change analysis was performed on the one-way anova dataset, probes with a fold change greater than 2 between any of the conditions were carried forward) are in archive E-TABM-1012.additional.zip. Quality control: Six biological replicates (sheep, n=6), multiple biopsies pooled from each animal at each time point of infection. Pooled samples from each sheep at each time point hybridised in single-dye (Cy3) format to Agilent ovine arrays. Positive and negative control probes utilised to assess array QC and real time qRT-PCR validation of selected array probes

2010-08-01 | E-TABM-1012 | biostudies-arrayexpress

Gene silencing by RNA interference in the ectoparasitic mite, Psoroptes ovis

Project description:Gene silencing by RNA interference in the ectoparasitic mite, Psoroptes ovis

| PRJEB28594 | ENA

Ovis canadensis isolate:BS48

Project description:Ovis canadensis isolate:BS48 Genome sequencing and assembly

| PRJNA399410 | ENA

Ovis ammon isolate:KGZ

Project description:Ovis ammon isolate:KGZ Genome sequencing and assembly

| PRJNA361450 | ENA

Ovis canadensis canadensis isolate:43U

Project description:Ovis canadensis canadensis isolate:43U Genome sequencing