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Rhinolophus sinicus; Aselliscus stoliczkanus; Taphozous melanopogon; Rousettus leschenaultii

ABSTRACT: Four bat species' Raw sequence reads

PROVIDER: PRJNA436205 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	SRR6796682_1.fastq.gz	Fastqsanger.gz
	SRR6796682_2.fastq.gz	Fastqsanger.gz
	SRR6796683_1.fastq.gz	Fastqsanger.gz
	SRR6796683_2.fastq.gz	Fastqsanger.gz
	SRR6796684_1.fastq.gz	Fastqsanger.gz

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Rhinolophus sinicus Aselliscus stoliczkanus Taphozous melanopogon Rousettus leschenaultii

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Chromosome-level genome assembly of the Stoliczka's Asian trident bat (Aselliscus stoliczkanus).

Project description:Stoliczka's Asian trident bat (Aselliscus stoliczkanus) is a small-bodied species and very sensitive to climate change. Here, we presented a chromosome-level genome assembly of A. stoliczkanus by combining Illumina sequencing, Nanopore sequencing and high-throughput chromatin conformation capture (Hi-C) sequencing technology. The genome assembly was 2.18 Gb in size with 98.26% of the genome sequences anchored onto 14 autosomes and two sex chromosomes (X and Y). The quality of the genome assembly is very high with a contig and scaffold N50 of 72.98 and 162 Mb, respectively, Benchmarking Universal Single-Copy Orthologs (BUSCO) score of 96.6%, and the consensus quality value (QV) of 47.44. A total of 20,567 genes were predicted and 98.8% of these genes were functionally annotated. Syntenic blocks between A. stoliczkanus and Homo sapiens, together with previous comparative cytogenetic studies, provide valuable foundations for further comparative genomic and cytogenetic studies in mammals. The reference-quality genome of A. stoliczkanus contributes an important resource for conservative genomics and landscape genomics in predicting adaptation and vulnerability to climate change.

| S-EPMC10724287 | biostudies-literature

Microbiome analysis reveals the abundance of bacterial pathogens in Rousettus leschenaultii guano.

Project description:Bats are crucial for proper functioning of an ecosystem. They provide various important services to ecosystem and environment. While, bats are well-known carrier of pathogenic viruses, their possible role as a potential carrier of pathogenic bacteria is under-explored. Here, using culture-based approach, employing multiple bacteriological media, over thousand bacteria were cultivated and identified from Rousettus leschenaultii (a frugivorous bat species), the majority of which were from the family Enterobacteriaceae and putative pathogens. Next, pathogenic potential of most frequently cultivated component of microbiome i.e. Escherichia coli was assessed to identify its known pathotypes which revealed the presence of virulent factors in many cultivated E. coli isolates. Applying in-depth bacterial community analysis using high-throughput 16?S rRNA gene sequencing, a high inter-individual variation was observed among the studied guano samples. Interestingly, a higher diversity of bacterial communities was observed in decaying guano representative. The search against human pathogenic bacteria database at 97% identity, a small proportion of sequences were found associated to well-known human pathogens. The present study thus indicates that this bat species may carry potential bacterial pathogens and advice to study the effect of these pathogens on bats itself and the probable mode of transmission to humans and other animals.

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