Ontology highlight
ABSTRACT:
PROVIDER: PRJNA437657 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Generation of proteomic data from coral nubbins collected from a single Montipora capitata colony in Kaneohe Bay, Hawaii. Over a five-week period, the coral nubbins collected were exposed to ambient and thermal stress conditions, with data generated at three key time points designed to capture the response of the corals to bleaching. Additionally, nubbins from each wild colony were flash frozen directly from the field.
2021-11-24 | MSV000088443 | MassIVE
Project description:This strain was collected from the surface waters of Kaneohe Bay, Hawaii.
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Project description:Species identification of fragmentary bones remains a challenging task in archeology and forensics. A species identification method for such fragmentary bones that has recently attracted interest is the use of bone collagen proteins. We developed a method similar to DNA barcoding that reads collagen protein sequences in bone and automatically determines the species by performing sequence database searches. We tested our method using bone samples from 30 vertebrate species ranging from mammals to fish.
2023-12-14 | PXD045402 | Pride
Project description:Corals in nearshore marine environments are increasingly exposed to reduced water quality, which is the major local threat to coral reefs in Hawaii. Corals surviving in such conditions may have adapted to withstand sedimentation, pollutants, and other environmental stressors. Lobe coral (Porites lobata) populations from Maunalua Bay, Hawaii showed clear genetic differentiation along with distinct cellular protein expressions between the 'polluted, high-stress' nearshore site and the 'low-stress' offshore site. To understand the driving force of the observed genetic partitioning, reciprocal transplant and common-garden experiments were conducted using the nearshore and offshore colonies of P. lobata from Maunalua Bay to assess phenotypic differences between the two coral populations. Stress-related physiological and molecular responses were compared between the two populations. Proteomic responses highlighted the inherent differences in the cellular metabolic state and activities between the two populations under the same environmental conditions; nearshore corals did not significantly alter their proteome between the sites, while offshore corals responded to the nearshore transplantation with increased abundances of proteins associated with detoxification, antioxidant, and various metabolic processes. The response differences across multiple phenotypes suggest that the observed genetic partitioning was likely due to local adaptation.
2021-04-20 | PXD021407 | Pride
Project description:Here, we validate a novel protocol, Bulk RNA Barcoding and sequencing (BRB-seq), that combines the multiplexing-driven cost-effectiveness of a single-cell RNA-seq protocol with the efficiency of a bulk RNA-seq procedure. For this we first gauge the applicability of the SCRB-seq protocol on bulk DMSO and BAY treated human LCL, and compare its effectiveness as compared to TruSeq.
2018-07-07 | E-MTAB-6984 | biostudies-arrayexpress