Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptomics analysis of the Chlamydomonas reinhardtii diurnal cycle.

ABSTRACT: Transcriptomics analysis of the Chlamydomonas reinhardtii diurnal cycle.

PROVIDER: PRJNA445880 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6904700.fastq.gz	Fastqsanger.gz
	SRR6904710.fastq.gz	Fastqsanger.gz
	SRR6904720.fastq.gz	Fastqsanger.gz
	SRR6904730.fastq.gz	Fastqsanger.gz
	SRR6904701.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

Transcriptomics analysis of the Chlamydomonas reinhardtii diurnal cycle.

Project description:Here, we report a transcriptomics analysis on a day in the life of Chlamydomonas reinhardtii. Cultures of this unicellular alga were grown in photobioreactors on a 12 h light / 12 h dark cycle. Samples were collected at regular intervals and subjected to a transcriptomics analysis by RNA-Seq.

2019-01-03 | GSE112394 | GEO

Transcriptome analysis of Chlamydomonas reinhardtii chloroplast and mitochondria

Project description:Here, we report on the transcriptome of the organelles of the micro-alga, Chlamydomonas reinhardtii, sampled under a number of different conditions. The preparation of the RNA-Seq libraries and their analysis were performed using protocols optimized for organellar transcripts. Samples include growth in media +/– Fe, growth in media +/– Cu, diurnal growth samples collected in dark and light, and the sexual cycle.

2017-11-27 | GSE101944 | GEO

Small RNAs in Chlamydomonas reinhardtii

Project description:RNA populations in Chlamydomonas reinhardtii Keywords: Highly parallel pyrosequencing

2007-05-16 | GSE7308 | GEO

Transcriptomics study of excess Mn (1000 uM) in Chlamydomonas reinhardtii

Project description:Liquid cultures of the unicellular green alga, Chlamydomonas reinhardtii were grown in media with 6 uM Mn (control) or 1000 uM Mn (experimental), and analyzed by RNA-Seq to identify genes that are differentially expressed in response to excess Mn.

2022-03-25 | GSE169756 | GEO

Expression analysis of Chlamydomonas reinhardtii exposed to silver

Project description:Chlamydomonas reinhardtii exposed to various concentrations of silver

2013-10-01 | GSE48677 | GEO

Small RNAs in Chlamydomonas reinhardtii

Project description:RNA populations in Chlamydomonas reinhardtii Keywords: Highly parallel pyrosequencing Small RNAs were prepared from Chlamydomonas reinhardtii total extracts,ligated to a 3' adaptor and a 5' acceptor sequentially, and then RT-PCR amplified. PCR products were reamplified using a pair of 454 cloning primers and provided to 454 Life Sciences (Branford, CT) for sequencing. For technical details, see Tao Zhao, Guanglin Li, Shijun Mi, Shan Li, Gregory J. Hannon, Xiu-Jie Wang, and Yijun Qi. 2007. A Complex System of Small RNAs in the Unicellular Green Alga Chlamydomonas reinhardtii. Genes & Development

2007-05-15 | E-GEOD-7308 | biostudies-arrayexpress

Endogenous small RNAs from Chlamydomonas reinhardtii strain J3(mt-) vegetative cells

Project description:endogenous small RNAs from Chlamydomonas reinhardtii strain J3(mt-) vegetative cells Keywords: High throughput 454 small RNA sequencing

2007-06-04 | GSE7575 | GEO

Expression analysis of Chlamydomonas reinhardtii exposed to silver

Project description:Chlamydomonas reinhardtii exposed to various concentrations of silver For this experiment,C. reinhardtii were exposed to (4) different concentrations of silver, as biological triplicates

2013-10-01 | E-GEOD-48677 | biostudies-arrayexpress

Chlamydomonas reinhardtii transcriptional responses to cerium dioxide nanoparticles

Project description:Agilent gene expression microarrays (Bham Chlamydomonas reinhardtii Agilent-029192 15k v1) were used to profile transcriptional changes afeter exposure of Chlamydomonas reinardtii algae to cerium dioxide nanoparticles.

2014-09-01 | E-MTAB-2454 | biostudies-arrayexpress

UV-B-induced gene expression changes in Chlamydomonas reinhardtii

Project description:We analysed global gene expression changes in Chlamydomonas reinhardtii in response to 1h UV-B, applied at the same low level that was seen to promote subsequent UV-B stress tolerance, in order to elucidate the transcriptional reprogramming that leads to UV-B acclimation. mRNA profiles generated by deep sequencing from triplicate replicate Chlamydomonas reinhardtii samples sourced from independent cultures either protected from UV-B or exposed to 1h acclimation-level UV-B.

2015-11-11 | E-GEOD-68739 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data