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Epichloe festucae

ABSTRACT: Transcriptomic data from Epichloë HepA deletion mutants

PROVIDER: PRJNA447872 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR7640300_1.fastq.gz	Fastqsanger.gz
	SRR7640300_2.fastq.gz	Fastqsanger.gz
	SRR7640310_1.fastq.gz	Fastqsanger.gz
	SRR7640310_2.fastq.gz	Fastqsanger.gz
	SRR7640301_1.fastq.gz	Fastqsanger.gz

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Epichloe festucae

Project description:An endophyte of grasses in the subfamily Pooideae

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Functional characterization of salicylate hydroxylase from the fungal endophyte Epichloe festucae.

Project description:Epichloë spp. are symbiotic fungal endophytes of many cool season grasses. The presence of the fungal endophytes often confers insect, drought, and disease tolerance to the host grasses. The presence of the fungal endophytes within the host plants does not elicit host defense responses. The molecular basis for this phenomenon is not known. Epichloë festucae, the endophyte of Festuca rubra, expresses a salicylate hydroxylase similar to NahG from the bacterium Pseudomonas putida. Few fungal salicylate hydroxylase enzymes have been reported. The in planta expression of an endophyte salicylate hydroxylase raised the possibility that degradation of plant-produced salicylic acid is a factor in the mechanism of how the endophyte avoids eliciting host plant defenses. Here we report the characterization of the E. festucae salicylate hydroxylase, designated Efe-shyA. Although the fungal enzyme has the expected activity, based on salicylic acid levels in endophyte-free and endophyte-infected plants it is unlikely that expression of the endophyte salicylate hydroxylase is a factor in the lack of a host defense response to the presence of the fungal endophyte.

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Epichloe festucae Fl1

Project description:Epichloe festucae fl1 genome sequencing and assembly

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Epichloe festucae E2368

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Epichloe festucae Fl1

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Epichloe typhina E5819

Project description:Whole genome sequence of Epichloë typhina E5819

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Analysis of Epichloe festucae small secreted proteins in the interaction with Lolium perenne.

Project description:Epichloë festucae is an endophyte of the agriculturally important perennial ryegrass. This species systemically colonises the aerial tissues of this host where its growth is tightly regulated thereby maintaining a mutualistic symbiotic interaction. Recent studies have suggested that small secreted proteins, termed effectors, play a vital role in the suppression of host defence responses. To date only a few effectors with important roles in mutualistic interactions have been described. Here we make use of the fully assembled E. festucae genome and EffectorP to generate a suite of 141 effector candidates. These were analysed with respect to their genome location and expression profiles in planta and in several symbiosis-defective mutants. We found an association between effector candidates and a class of transposable elements known as MITEs, but no correlation with other dynamic features of the E. festucae genome, such as transposable element-rich regions. Three effector candidates and a small GPI-anchored protein were chosen for functional analysis based on their high expression in planta compared to in culture and their differential regulation in symbiosis defective E. festucae mutants. All three candidate effector proteins were shown to possess a functional signal peptide and two could be detected in the extracellular medium by western blotting. Localization of the effector candidates in planta suggests that they are not translocated into the plant cell, but rather, are localized in the apoplastic space or are attached to the cell wall. Deletion and overexpression of the effector candidates, as well as the putative GPI-anchored protein, did not affect the plant growth phenotype or restrict growth of E. festucae mutants in planta. These results indicate that these proteins are either not required for the interaction at the observed life stages or that there is redundancy between effectors expressed by E. festucae.

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Development and characterization of nuclear microsatellite markers in the endophytic fungus Epichloe festucae (Clavicipitaceae).

Project description:UNLABELLED: PREMISE OF THE STUDY:Microsatellite primers were developed for the endophytic fungus Epichloë festucae, which is symbiotic with Festuca rubra, to study the population genetics of the species and to compare population structures between E. festucae and its host F. rubra. • METHODS AND RESULTS:We developed 14 polymorphic markers using the unplaced genomic scaffold sequences of E. festucae from GenBank. The number of alleles per locus (A) varied from four to 16, and unbiased haploid diversity (h) was 0.717 in eight populations located in the Faroe Islands, Finland, and Spain. The Spanish populations possessed a higher number of alleles and haploid diversity (on average A = 5.1 and h = 0.591, respectively) compared to northern populations (on average A = 1.5 and h = 0.199, respectively). • CONCLUSIONS:These polymorphic markers will be used by grass breeders for uses including the improvement of commercial turfgrass cultivars, and by population geneticists to study different species of the Epichloë genus.

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Lolium perenne/Epichloe festucae mixed library

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