Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Plasmodiophora brassicae

ABSTRACT: Plasmodiophora brassicae Variation

PROVIDER: PRJNA447991 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6917690.fastq.gz	Fastqsanger.gz
	SRR6917700.fastq.gz	Fastqsanger.gz
	SRR6917691.fastq.gz	Fastqsanger.gz
	SRR6917701.fastq.gz	Fastqsanger.gz
	SRR6917692.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 21

Similar Datasets

Plasmodiophora brassicae

Project description:Plasmodiophora brassicae transcriptome.

| PRJNA771176 | ENA

Plasmodiophora brassicae

Project description:Plasmodiophora brassicae overview

| PRJNA345061 | ENA

Plasmodiophora brassicae infection of Arabidopsis thaliana

Project description:Arabipdosis thaliana (ecotype Col-0) was infected with the root pathogen Plasmodiophora brassicae. Gene expression of the host plant has been analyzed at two time points after inoculation (10 and 23 days after inoculation) compared to the correspondend control plants.

2005-02-25 | E-MEXP-254 | biostudies-arrayexpress

Plasmodiophora brassicae

Project description:Plasmodiophora brassicae Genome sequencing and assembly

| PRJNA353022 | ENA

Plasmodiophora brassicae

Project description:Plasmodiophora brassicae Transcriptome or Gene expression

| PRJNA331018 | ENA

Plasmodiophora brassicae

Project description:Plasmodiophora brassicae Transcriptome or Gene expression

| PRJNA331017 | ENA

Plasmodiophora brassicae strain:eH

Project description:Plasmodiophora brassicae strain:eH Genome sequencing and assembly

| PRJNA422793 | ENA

Differential expression of miRNAs in Brassica napus root following infection with Plasmodiophora brassicae

Project description:Canola (oilseed rape, Brassica napus L.), is susceptible to infection by the biotrophic protist Plasmodiophora brassicae, the causal agent of clubroot. To understand the roles of microRNAs (miRNAs) during the post-transcriptional regulation of disease initiation and progression, we have characterized the changes in miRNA expression profiles in canola roots during clubroot disease development and have compared these to uninfected roots. Two different stages of clubroot development were targeted in this miRNA profiling study: an early time of 10-dpi for disease initiation and a later 20-dpi, by which time the pathogen had colonized the roots (as evident by visible gall formation and histological observations). P. brassicae responsive miRNAs were identified and validated by qRT-PCR of miRNAs and the subsequent validation of the target mRNAs through starBase degradome analysis, and through 5’ RLM-RACE. This study identifies putative miRNA-regulated genes with roles during clubroot disease initiation and development. Putative target genes identified in this study included: transcription factors (TFs), hormone-related genes, as well as genes associated with plant stress response regulation such as cytokinin, auxin/ethylene response elements. The results of our study may assist in elucidating the role of miRNAs in post-transcriptional regulation of target genes during disease development and may contribute to the development of strategies to engineer durable resistance to this important phytopathogen.

2013-11-28 | GSE51590 | GEO

Plasmodiophora brassicae strain:ZJ-1

Project description:Plasmodiophora brassicae strain:ZJ-1 Transcriptome or Gene expression

| PRJNA331021 | ENA

Plasmodiophora brassicae isolate:ZJ-1

Project description:Plasmodiophora brassicae isolate:ZJ-1 Genome sequencing and assembly

| PRJNA335327 | ENA