Grus japonensis
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA471758 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR7285959_1.fastq.gz | Fastqsanger.gz | |||
| SRR7285959_2.fastq.gz | Fastqsanger.gz |
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Project description:The red-crowned crane (Grus japonensis) is an endangered species distributed across southeast Russia, northeast China, Korea, and Japan. Here, we sequenced for the first time the full-length unreferenced transcriptome of red-crowned crane mixed samples using a PacBio Sequel platform. A total of 359,136 circular consensus sequences (CCS) were obtained via clustering to remove redundancy. A total of 303,544 full-length non-chimeric sequences were identified by judging whether CCS contained 5' and 3' adapters, and the poly(A) tail. Eight samples were sequenced using Illumina, and PacBio sequencing data were corrected according to the collected Illumina data to obtain more accurate full-length transcripts. A total of 4,100 long non-coding RNAs, 13,115 simple sequences repeat loci and 29 transcription factor families were identified. The expression of lncRNAs and TFs in pancreas was lowest comparing with other tissues. Many enriched immune-related transmission pathways (MHC and IL receptors) were identified in the spleen. This study will contribute to a better understanding of the gene structure and post-transcriptional regulatory network, and provide references for future studies on red-crowned cranes.
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Project description:The red-crowned crane (Grus japonensis) is an endangered species listed by International Union for Conservation of Nature (IUCN) HARRIS J (2013). The largest population of this species is distributed mainly in China and Russia, which is called continental population SU L (2012)-Curt D (1996). This population is migratory, which migrates from its breeding range located in Northeast China and Southern Russia, to the wintering range in the south of China to spend the winter every year. The breeding range of this species is critical for red-crowned crane to survive and maintain its population. Previous studies showed the negative effects of habitat loss and degradation on the breeding area of red-crowned crane Ma Z (1998), Claire M (2019). Climate change may also threat the survival of this endangered species. Previous studies investigated the impacts of climate change on the breeding range or wintering range in China Wu (2012), [1]. However, no study was conducted to assess the potential impacts of climate change on the whole breeding range of this species. Here, we used bioclimatic niche modeling to predict the potential breeding range of red-crowned crane under current climate conditions and project onto future climate change scenarios. Our results show that the breeding range of the continental population of red-crowned crane will shift northward over this century and lose almost all of its current actual breeding range. The climate change will also change the country owning the largest portion of breeding range from China to Russia, suggesting that Russia should take more responsibility to preserve this endangered species in the future.
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