Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comparative analysis of the root and leaf transcriptomes in Chelidonium majus L.

ABSTRACT: Comparative analysis of the root and leaf transcriptomes in Chelidonium majus L.

PROVIDER: PRJNA481977 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7542740_1.fastq.gz	Fastqsanger.gz
	SRR7542740_2.fastq.gz	Fastqsanger.gz
	SRR7542741_1.fastq.gz	Fastqsanger.gz
	SRR7542741_2.fastq.gz	Fastqsanger.gz
	SRR7542742_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Comparative analysis of the root and leaf transcriptomes in Chelidonium majus L.

Project description:To understand the biosynthesis of C. majus BIAs, we performed de novo transcriptome sequencing of leaf and root tissues of C. majus using Illumina high-throughput sequencing technology.

2018-07-20 | GSE117393 | GEO

Chelidonium majus

Project description:Chelidonium majus Organism overview

| PRJNA84051 | ENA

Chelidonium majus

Project description:Chelidonium majus Raw sequence reads

| PRJNA481859 | ENA

Chelidonium majus

Project description:Chelidonium majus Raw sequence reads

| PRJNA574026 | ENA

Chelidonium majus

Project description:Chelidonium majus Raw sequence reads

| PRJNA376854 | ENA

Chelidonium majus

Project description:Chelidonium majus Transcriptome or Gene expression

| PRJNA79869 | ENA

The influence of the Chelidonium majus extract NSC-631570 on gene expression in the head and neck carcinoma cell line FaDu

Project description:It has been shown that the Chelidonium majus extract NSC-631570 has growth and invasion inhibiting properties on head and neck carcinoma cell lines. The Affymetrix PrimeView array was used to gain a first view on the influence of NSC-631570 on gene expression of head and neck cancer cells.

2018-06-16 | GSE115874 | GEO

Chelidonium majus strain:Zurawiniec 1

Project description:Chelidonium majus strain:Zurawiniec 1 Transcriptome or Gene expression

| PRJNA264791 | ENA

The Greater Celandine: Identification and characterization of a novel antimicrobial peptide sequence from Chelidonium majus

Project description:A highly abundant, cysteine-rich peptide, deemed CM-AMP1, is characterized through multiple mass spectrometric approaches. Complimentary CID and EAD fragmentation types are used to gain full sequence coverage of the full-length peptide. CM-AMP1 shares little sequence similarity to any proteins in publicly available databases, highlighting the novelty of its cysteine landscape and core motif. The presence of three disulfide bonds in the native peptide confers proteolytic stability, and antimicrobial activity is greatly decreased upon alkylation of the cysteine residues. Synthetic variants of CM-AMP1 are used to confirm activity of the full-length sequence and the core motif. To assess the biological impact, E. coli was grown in a sub-lethal concentration of CM-AMP1 and quantitative proteomics was used to identify proteins produced by the bacteria under stress, ultimately suggesting a membrane lytic antimicrobial mechanism of action. This study integrates multiple analytical methods for molecular and biological characterization of a unique antimicrobial peptide identified from C. majus.

2024-01-27 | PXD045877 | Pride

Comparing root transcriptomes of cultivated and wild carrots

Project description:Cultivated carrot (Daucus carota L. ssp. sativus) was domesticated from wild carrot (Daucus carota L. ssp. carota) with radical different traits. The aim of this study was to compare the root transcriptomes between cultivated and wild carrots for SNP discovery, inferring domestication process, and identifying domestication genes. Six cultivated carrots representing main European carrot root types and five wild carrot populations from widely dispersed sites were used. The root transcriptomes were sequenced with multiplexing paried-end sequencing in Illumina Genome Analyzer IIx.

2013-10-24 | E-MTAB-1340 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data