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Genome wide map of H3K9me2 in fission yeast Schizosaccharomyces pombe.

ABSTRACT: Genome wide map of H3K9me2 in fission yeast Schizosaccharomyces pombe.

PROVIDER: PRJNA489700 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR7798690.fastq.gz	Fastqsanger.gz
	SRR7798691.fastq.gz	Fastqsanger.gz
	SRR7798686.fastq.gz	Fastqsanger.gz
	SRR7798687.fastq.gz	Fastqsanger.gz
	SRR7798688.fastq.gz	Fastqsanger.gz

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Genome wide map of H3K9me2 in fission yeast Schizosaccharomyces pombe.

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Project description:Here, we report the high-throughput profiling of histone modification (H3K9me2) in fission yeast Schizosaccharomyces pombe. We generated genome-wide H3K9me2 maps of fission yeast mutants in swo1-26 (temperature sensitive, ts) cells at 25℃ and 37℃. We find that H3K9me2 enrichment at heterochromatin regions, especially at the mating-type locus and subtelomeres, is compromised, suggesting heterochromatin assembly defects.

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Label-Free Phosphoproteomics Profiling of Fission Yeast Schizosaccharomyces pombe

Project description:The phosphorylation of proteins modulates various functions of proteins and plays an important role in regulation of cell signaling. In the recent years, the label-free quantitative (LFQ) phos-phoproteomics has become the powerful tool to analyze the phosphorylation of proteins within the complex samples. Despite the great progress, the studies of protein phosphorylations are still limited in throughput, robustness, and reproducibility, hampering analyses that involve multiple perturbations, such as those needed to follow the dynamics of phosphoproteomes. To address these challenges, we introduce here the LFQ phosphoproteomics workflow that is based on Fe-IMAC phosphopeptide enrichment followed by strong anion exchange (SAX) and porous graphitic carbon (PGC) fractionation strategies. We applied this workflow to analyze the whole-cell phosphoproteome of the fission yeast Schizosaccharomyces pombe. Using the strategy, we identified 8353 phosphosites from which 1274 were newly identified. This provides the sig-nificant addition to the S. pombe phosphoproteome. Results of our study highlight that combining of PGC and SAX fractionation strategies substantially increases the robustness and specificity of LFQ phosphoproteomics. Overall, the presented LFQ phosphoproteomics workflow opens the door for studies that would get better insight into the complexity of the protein kinase functions of the fission yeast S. pombe.

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