Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Anolis

ABSTRACT: Restriction site-associated DNA markers from mainland Anolis lizard species

PROVIDER: PRJNA492310 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13990300_1.fastq.gz	Fastqsanger.gz
	SRR13990300_2.fastq.gz	Fastqsanger.gz
	SRR13990400_1.fastq.gz	Fastqsanger.gz
	SRR13990400_2.fastq.gz	Fastqsanger.gz
	SRR13990301_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 434

Similar Datasets

Anolis auratus

Project description:Genome sequencing of an Anolis auratus lizard

| PRJNA202248 | ENA

The transcriptome of embryos of the green anole, Anolis carolinensis, at 28 and 38 somite pair stages

Project description:Anolis carolinensis embryos were collected 0-1 days post egg laying, and total RNA was extracted for RNA-Seq analysis (Illumina Hi-Seq2000). Transcriptome sequence from these stages in the green anole, equivalent to mouse 9.5-10.5 dpc embryos, will help to improve gene annotations in A. carolinensis and provide expression level information for key organogenesis and patterning processes. Anolis carolinensis embryos were collected 0-1 days post egg laying for RNA-Seq analysis. The two embryos collected were at 28 somite-pair (28S) and 38 somite-pair (38S), equivalent to mouse 9.5 dpc and 10.5 dpc embryos, respectively. Total RNA was extracted using the total RNA component of the mirVana (Ambion) kit, RNA-Seq library prep was carried out using the NuGEN Ovation RNA-Seq kit, and sequencing was carried out on an Illumina HiSeq 2000, following the manufacturer's protocol. The untrimmed data was then aligned to the Anolis carolinensis reference genome (Anocar2.0) using tophat. Published: Eckalbar WL, Lasku E, Infante CR, Elsey RM, Markov GJ, Allen AN, Corneveaux JJ, Losos JB, DeNardo DF, Huentelman MJ, Wilson-Rawls J, Rawls A, Kusumi K. Somitogenesis in the anole lizard and alligator reveals evolutionary convergence and divergence in the amniote segmentation clock. Dev Biol. DOI: 10.1016/j.ydbio.2011.11.021

2011-12-14 | E-GEOD-34415 | biostudies-arrayexpress

Embiotocinae

Project description:Embiotocinae Restriction site associated DNA markers - RADseq

| PRJNA322682 | ENA

Anolis cristatellus

Project description:Genome-wide epigenetic isolation by environment in a widespread Anolis lizard

| PRJNA579702 | ENA

lizards

Project description:Restriction site-associated DNA markers of Australian lizards

| PRJNA755251 | ENA

RNA-seq of poly-A enriched total RNA of brain, liver, kidney, heart and skeletal muscle samples from lizard

Project description:This experiment contains the Anolis carolinensis subset of data from the experiment E-GEOD-41338 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41338/). mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) were generated by deep sequencing using Illumina HiSeq to better understand how species with similar repertoires of protein-coding genes differ so markedly at the phenotypic level.

2012-12-22 | E-MTAB-3727 | biostudies-arrayexpress

Anolis carolinensis

Project description:Sequencing of flow sorting derived microchromosome-specific DNA of Anolis carolinensis and Anolis sagrei

| PRJNA314937 | ENA

Anolis carolinensis

Project description:Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

| PRJNA278692 | ENA

Project description:Restriction-site associated DNA

| PRJNA588306 | ENA

Gene expression profile at single-cell level of regenerating lizard (Anolis carolinensis) tail

Project description:Lizards cannot naturally regenerate limbs but are the closest known relatives of mammals capable of epimorphic tail regrowth. However, the mechanisms regulating lizard blastema derivation and chondrogenesis remain unclear. We utilized single-cell RNA sequencing analyses of regenerating lizard tails throughout the course of regeneration to assess diversity and heterogeneity in regeneating tail cell populations.

2023-06-20 | GSE234876 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data