Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Melampsora medusae strain:Mmd05TRE539

ABSTRACT: Melampsora medusae f. sp. deltoidae Mmd05TRE539 Transcriptome

PROVIDER: PRJNA499353 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Project description:We aim to understand the global transcriptional response of hybrid poplar NM6 (Populus nigra x Populus maximoviczii) to infection by two biotrophic Melampsora fungi, M. larici-populina and M. medusae f. sp. deltoidae separately and simultanously. Transcript profilling revealed 699 differentially expressed genes whose expression level was equal or higher than 2-fold between infected and noninfected tissues. In the mixed infection, our results showed an additive response of the two pathogens. Genes regulated as a result of Melampsora infection were generally induced and mainly involved in primary/secondary metabolism that include cell wall reinforcement and lignification, defense-related processes like pathogenesis-related and stress response, signal perception and transduction mechanisms and regulation of transcription. Keywords: Stress response

2008-11-22 | GSE9673 | GEO

Melampsora medusae strain:Mmd05TRE539

Project description:Melampsora medusae f. sp. deltoidae Standard Draft genome sequencing

| PRJNA500109 | ENA

Melampsora medusae

Project description:Melampsora medusae overview

| PRJNA503032 | ENA

Melampsora medusae strain:Mmt05Ida529

Project description:Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Transcriptome

| PRJNA537176 | ENA

Melampsora medusae strain:Mmt05Ida529

Project description:Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Standard Draft genome sequencing

| PRJNA538401 | ENA

Melampsora medusae f. sp. deltoidis strain:Mmd05TRE539

Project description:Melampsora medusae f. sp. deltoidis strain:Mmd05TRE539 Genome sequencing and assembly

| PRJNA366080 | ENA

Melampsora medusae x Melampsora occidentalis strain:Clatskanie

Project description:Melampsora x columbiana Clatskanie transcriptome

| PRJNA572452 | ENA

Melampsora medusae x Melampsora occidentalis

Project description:Melampsora x columbiana overview

| PRJNA573262 | ENA

Melampsora medusae x Melampsora occidentalis strain:Clatskanie

Project description:Melampsora x columbiana Clatskanie genome sequencing

| PRJNA346795 | ENA

Transcription profiling of poplar WRKY23 reveals a regulatory role in defense: WRKY23-overexpressor

Project description:To investigate the function of poplar WRKY23, we generated PtWRKY23-overexpressing and -underexpressing (RNAi) plants. Transgenic plants were inoculated with Melampsora rust or mock-inoculated for assessment of rust-resistance and for gene expression profiling using the poplar Affymetrix GeneChipÂ® to study the consequences of PtWRKY23 overexpression and underexpression. Transcriptome analysis of PtWRKY23 overexpressors revealed a significant overlap with the Melampsora-infection response. Transcriptome analysis also indicated that PtWRKY23 affects redox homeostasis and cell wall-related metabolism. Experiment Overall Design: Leaf discs from wildtype, WRKY23-overexpressor and WRKY23-RNAi plants were inoculated with Melampsora medusae f. sp. tremuloidae (Mmt) or were mock-inoculated (control). At five days post-inoculation, tissues were harvested for RNA extraction and hybridization to Affymetrix GeneChipsÂ®. Three biological replications were performed for each line and each inoculation or mock-inoculation. A total of 15 Affymetrix GeneChipsÂ® were used in this study. Data for the WRKY23-overexpressor plants were processed separately from the data for the Mmt-inoculated WRKY23-RNAi plants. The raw data for the Mmt-inoculated wildtype plants were the same in both cases. Experiment Overall Design: This part of the study includes 12 RNA samples consisting of three biological replicates for each of the mock-inoculated or Mmt-inoculated WT and WRKY23-overexpressing plants.

2009-08-09 | E-GEOD-16417 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data