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Solanum tuberosum cultivar:Interspecific potato somatic hybrid P8

ABSTRACT: Solanum tuberosum cultivar:Interspecific potato somatic hybrid P8 Genome sequencing and assembly

PROVIDER: PRJNA501483 | ENA |

REPOSITORIES: ENA

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Solanum tuberosum cultivar:Somatic hybrid P8

Project description:Whole genome sequencing of Interspecific Potato Somatic Hybrid P8

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Solanum tuberosum cultivar:Interspecific potato somatic hybrid progenies MSH/14-112 (P8 x Kufri Jyoti)

Project description:Solanum tuberosum cultivar:Interspecific potato somatic hybrid progenies MSH/14-112 (P8 x Kufri Jyoti) Genome sequencing and assembly

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Solanum tuberosum cultivar:Interspecific potato hybrid MSH/14-112 (P8 x Kufri Jyoti)

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Transcriptomic response of in vitro potato (Solanum tuberosum L.) to piezoelectric ultrasound

Project description:As part of a wider project to assess the impact of ultrasound on in vitro plant growth, this paper aimed to determine whether the application of piezoelectric ultrasound (PE-US) would induce changes to the transcriptome of in vitro potato (Solanum tuberosum L.). After exposing explants (single-node segments with a single leaf) to PE-US (35 kHz; 70 W) for 20 min, the effect of this stressor was determined at 0 h, 24 h, 48 h, 1 w and 4 w to assess the possible immediate and residual effects of PE-US on the potato transcriptome.

2020-03-03 | GSE135294 | GEO

Plant genes affected by Solanum tuberosum and Colorado potato beetle interaction

Project description:Potato leaves From Solanum tuberosum var. Kennebec will be wounded and oral secretions from 4th instar CPB will be isolated and added to the plants as described by Kruzmane et al (2002, Physiol. Plantarum 115:577-584). The leaf from the 6th node of the potato plant will be wounded or wounded and treated with oral secretions from CPB. Unwounded leaves from node 1-5 of the wounded and wounded plus oral secretions plants will be harvested as systemic material. The leaves will be harvested after 4 hrs and RNA will be isolated. 4 hrs was chosen because this represents a time when early and late induced genes should both be present. In addition, the leaf from the 6th node will be subjected to feeding by CPB that have been raised on potato leaves and starved for 16 hrs immediately prior to infestation. Insects will be allowed to feed for 1 hr and the leaves will be harvested after 3 additional hrs. An additional set of plants will be used to infest the leaf on the 6th node for 4 hrs. Leaves from the 6th node will be collected from uninfested plants after 4 hrs as a control. Three sets of 6-12 plants will be used for each sample. Keywords: Direct comparison

2007-09-01 | GSE8255 | GEO

The nitrogen responsive transcriptome in potato (Solanum tuberosum L.) reveals significant gene regulatory motifs

Project description:Nitrogen (N) fertilization is an important abiotic factor for the growth of potato (S. tuberosum) because of its potential effects on yield. Because excess N in the soil runs off into water systems and negatively impacts the environment, studies on N use by the plant are key to decrease N-fertilizer use. Three commercial potato cultivars (Shepody, Russet-Burbank and Atlantic) were grown under two different rates of applied N-fertilizer (0 kg N ha-1 and 180 kg N ha-1) to obtain more information on the underlying gene regulation mechanisms associated with N. Plants with no added N had significantly lower concentrations of petiole nitrates, chlorophyll level indices, biomass and yield per hectare. Total mRNA samples were taken at two different time-points during the growth season and used for sequencing. The results for each cultivar and time-point were analysed separately to find differentially expressed genes. In total, thirty genes were found to be over-expressed and nine genes were found to be under-expressed in plants from all potato cultivars when they were grown with added N-fertilizer. The 1000 bp upstream flanking regions of the differentially expressed genes were analysed to find overrepresented motifs using three motif discovery algorithms (Seeder, Weeder and MEME). Nine different motifs were found, indicating potential gene regulatory mechanisms for potato under N-deficiency.

2016-06-21 | GSE75926 | GEO

Solanum tuberosum cultivar:E potato 3

Project description:Transcriptome of Solanum tuberosum 'E potato 3' and Pi04089 transgenic potato

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Solanum tuberosum cultivar:E potato 3

Project description:Transcriptome of Solanum tuberosum 'E potato 3' and Pi04089 transgenic potato

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Solanum tuberosum cultivar:E potato 3

Project description:Transcriptome of Solanum tuberosum 'E potato 3' and Pi04089 transgenic potato

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Plant genes affected by Solanum tuberosum and Colorado potato beetle interaction

2007-09-01 | E-GEOD-8255 | biostudies-arrayexpress