Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Steccherinum ochraceum strain:LE-BIN_3174

ABSTRACT: Steccherinum ochraceum strain:LE-BIN_3174 Genome sequencing and assembly

PROVIDER: PRJNA507755 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Halofilum ochraceum strain:XJ16

Project description:Halofilum ochraceum strain:XJ16 Genome sequencing and assembly

| PRJNA314916 | ENA

Gene expression in fetal gubernaculum and testis of wildtype (LE/wt) and cryptorchid (LE/orl) rats

Project description:The Long Evans/orl (LE/orl) rat is an animal model of inherited undescended testis (UDT). To explore genetic mechanisms of UDT, we studied differential gene expression in LE/orl and LE wild type (LE/wt) fetal gubernaculum and testis. Analyses of differentially expressed probe sets linked below as supplementary files: Analysis_methods.txt [A description of the analysis] gub.txt [Genes differentially expressed in between wt and orl gubernacula] testes.txt [Genes differentially expressed between wt and orl testes] wt.txt [Genes differentially expressed in wt gubernacular development] Keywords: strain/condition predisposition, disease state analysis, developmental

2008-02-03 | GSE7755 | GEO

Haliangium ochraceum

Project description:Haliangium ochraceum overview

| PRJNA60901 | ENA

Virgisporangium ochraceum strain:NBRC 16418

Project description:Virgisporangium ochraceum NBRC 16418 genome sequencing project

| PRJDB10178 | ENA

Pycanum ochraceum

Project description:Pycanum ochraceum complete mitochondrial genome Raw sequence reads

| PRJNA754508 | ENA

Schistosoma mansoni strain:LE

Project description:Schistosoma mansoni strain:LE Transcriptome or Gene expression

| PRJNA492415 | ENA

Schistosoma mansoni strain:LE

Project description:Schistosoma mansoni strain:LE Transcriptome or Gene expression

| PRJNA354932 | ENA

Schistosoma mansoni strain:LE

Project description:Schistosoma mansoni strain LE - Transcriptome or Gene expression

| PRJNA389649 | ENA

Schistosoma mansoni strain:LE

Project description:Schistosoma mansoni strain:LE Transcriptome or Gene expression

| PRJNA492452 | ENA

RNA-Seq transcriptome analysis of whole newborn lenses from FVB/N, Le-Cre and P0-3.9GFPCre mice

Project description:Here we report RNA-Seq data from RNA isolated from newborn lenses from FVB/N control mice as well as from newborn lenses of two different transgenic mouse lines (Le-Cre and P0-3.9GFPCre). Sequence reads of 51 bp were obtained from an illumine HiSeq 2000 system and mapped to the C57BL/6 reference genome (assembly GRCm38 (mm10)) using GSNAP software. Adapters and poor-quality regions were trimmed using Trimmomatic-0.36 software. Gene and isoform abundance was quantified using RSEM-1.3.0 software. Differential expression analysis was completed using DESeq2-1.10.1 software. For differential expression we used a cutoff value of equal to or greater than 1.5-fold change with an adjusted p value ≤ 0.05. The transcriptomes of both Le-Cre and P0-3.9GFPCre lenses closely matched the FVB/N control lenses. However, Le-Cre lenses exhibited deregulation of 15 murine genes, several of which are associated with apoptosis. In contrast, P0-3.9GFPCre lenses only deregulated two murine genes.

2019-02-26 | GSE125108 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data