Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Papaver somniferum

ABSTRACT: Gene clustering and copy number variation in alkaloid metabolic pathways of opium poppy

PROVIDER: PRJNA508405 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR10271167_subreads.fastq.gz	Fastqsanger.gz
	SRR10948617_1.fastq.gz	Fastqsanger.gz
	SRR10948617_2.fastq.gz	Fastqsanger.gz
	SRR8305580_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 58

Similar Datasets

Papaver somniferum

Project description:Transcriptome profiling of alkaloid biosynthesis induced opium poppy

| PRJNA238882 | ENA

Papaver somniferum

Project description:Regulation of alkaloid biosynthesis by miRNAs in opium poppy

| PRJNA264856 | ENA

Tissue-specific transcriptomic profiling of opium poppy (Papaver somniferum)

Project description:To facilitate genome annotation, we performed RNA sequencing of seven different opium poppy tissues (leaf, petal, stamen, capsule, stem, fine root, tap root).

2018-09-01 | GSE111119 | GEO

Regulation of alkaloid biosynthesis by miRNAs in opium poppy

Project description:MicroRNAs (miRNA) are ~21 nucleotide long, small endogenous non-coding RNAs that functioning in regulation of gene expression found in many eukaryotes. In this study, small RNA libraries of opium poppy from four different tissues (leaf, root, capsule, stem) were sequenced using high-throughput next generation Illumina sequencing (Solexa) technology to investigate potential mode of actions of miRNAs in alkaloid biosynthesis. A total of 27 opium poppy miRNAs which have roles in regulation of alkaloid biosynthesis were identified in this study. A six chip study using miRNA isolated from four separate tissues (capsule, leaf, stem, root). small RNA libraries of opium poppy tissues were sequenced using high-throughput next generation Illumina sequencing (Solexa) technology to investigate potential mode of actions of miRNAs in alkaloid biosynthesis. Furthermore, the novel opium poppy miRNAs were also confirmed by a direct small RNA cloning strategy. The microarray platform were performed to measure and analyze the mirnome of the different opium poppy tissues.

2014-12-15 | E-GEOD-62716 | biostudies-arrayexpress

Regulation of alkaloid biosynthesis by miRNAs in opium poppy

2014-12-15 | GSE62716 | GEO

Tissue-specific transcriptomic profiling of opium poppy (Papaver somniferum)

Project description:Tissue-specific transcriptomic profiling of opium poppy (Papaver somniferum)

| PRJNA435962 | ENA

Papaver somniferum

Project description:Comparative analysis of Papaver somniferum genotypes having contrasting latex and alkaloid profiles

| PRJNA166869 | ENA

Transcriptome profiling of alkaloid biosynthesis induced opium poppy

Project description:To identify the molecular basis of genome-wide transcriptome analysis in induced opium poppy capsule tissues NimbleGen microarray (12X135 K element) analysis was performed. Fungal elicitor methyl jasmonate (MeJa) treatment was applied on capsules of opium poppy during 0, 3, and 12 h.

2014-02-21 | GSE55196 | GEO

Comparative analysis of Papaver somniferum genotypes having contrasting latex and alkaloid profiles

Project description:Sampada and Sujata are two contrasting genotypes of Papaver somniferum that are contrasting in terms of their latex and alkaloid profiles. The major objective of the present study was to use a small-scale (750 target genes) microarray of P. somniferum for identification of genes that are differentially expressed in the capsule walls of the two contrasting genotypes, Sampada and Sujata. Nidarshana Chaturvedi and Mridula Singh made equal contribution as first authors to this data.

2013-12-30 | GSE37983 | GEO

Proteomics of opium poppy latex

Project description:Opium poppy accumulates copious amounts of several benzylisoquinoline alkaloids including morphine, noscapine, and papaverine, in the specialized cytoplasm of laticifers. The contiguous latex includes an abundance of related proteins belonging to the pathogenesis-related (PR)10 family known collectively as major latex proteins (MLPs) and representing at least 35% of the total cellular protein content. We show that the major latex proteins are a family of alkaloid-binding proteins.

2022-11-01 | PXD035860 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data