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Marine metagenome

ABSTRACT: 2 samples from Tampa Bay estuary marine uncultured phage metagenome

PROVIDER: PRJNA52403 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR100599.fastq.gz	Fastqsanger.gz
	SRR100600.fastq.gz	Fastqsanger.gz
	SRR100601.fastq.gz	Fastqsanger.gz
	SRR107103.fastq.gz	Fastqsanger.gz

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Metaproteomics of plastic biofilms in marine environments

Project description:To characterize the taxonomic and functional diversity of biofilms on plastics in marine environments, plastic pellets (PE and PS, ø 3mm) and wooden pellets (as organic control) were incubated at three stations: at the Baltic Sea coast in Heiligendamm (coast), in a dead branch of the river Warnow in Warnemünde (inlet), and in the Warnow estuary (estuary). After two weeks of incubation, all pellets were frozen for subsequent metagenome sequencing and metaproteomic analysis. Biofilm communities in the samples were compared on multiple levels: a) between the two plastic materials, b) between the individual incubation sites, and c) between the plastic materials and the wooden control. Using a semiquantitative approach, we established metaproteome profiles, which reflect the dominant taxonomic groups as well as abundant metabolic functions in the respective samples.

2021-11-01 | PXD012062 | Pride

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