Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Xinjiang Soil

ABSTRACT: Xinjiang Soil Raw sequence reads

PROVIDER: PRJNA526808 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8720100_1.fastq.gz	Fastqsanger.gz
	SRR8720100_2.fastq.gz	Fastqsanger.gz
	SRR8720110_1.fastq.gz	Fastqsanger.gz
	SRR8720110_2.fastq.gz	Fastqsanger.gz
	SRR8720120_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

Xinjiang Soil

Project description:Xinjiang Soil Raw sequence reads

| PRJNA526800 | ENA

Erythromycin fermentation fertilizer on soil in Yili, Xinjiang, China.

Project description:Erythromycin fermentation fertilizer on soil in Yili, Xinjiang, China. Raw sequence reads

| PRJNA647129 | ENA

Saline soil in Xinjiang

Project description:Saline soil in Xinjiang Genome sequencing and assembly

| PRJNA682686 | ENA

Intestinal microflora of Xinjiang Bactrian Camel

Project description:Intestinal microflora of Xinjiang Bactrian Camel Raw sequence reads

| PRJNA704179 | ENA

RNA-Seq Analysis to confirm Different Transcriptomic Profiles of Soil-Derived Functional Module Consortia.

Project description:Purpose: Deconstructing the soil microbiome into reduced-complexity functional modules represents a novel method of microbiome analysis. The goals of this study are to confirm differences in transcriptomic patterns among five functional module consortia. Methods: mRNA profiles of 3 replicates each of functional module enrichments of soil inoculum in M9 media with either 1) xylose, 2) n-acetylglucosamine, 3) glucose and gentamycin, 4) xylan, or 5) pectin were generated by sequencing using an Illumina platform (GENEWIZ performed sequencing). Sequence reads that passed quality filters were aligned to a soil metagenome using Burrows Wheeler Aligner. Resulting SAM files were converted to raw reads using HTSeq, and annotated using Uniref90 or EGGNOG databases. Results: To reduce the size of the RNA-Seq counts table and increase its computational tractability, transcripts containing a minimum of 75 total counts, but no more than 3 zero counts, across the 15 samples were removed. The subsequent dataset was normalized using DESeq2, resulting in a dataset consisting of 6947 unique transcripts across the 15 samples, and 185,920,068 reads. We identified gene categories that were enriched in a sample type relative to the overall dataset using Fisher’s exact test. Conclusions: our dataset confirms that the functional module consortia generated from targeted enrichments of a starting soil inoculum had distinct functional trends by enrichment type.

2020-01-14 | GSE143587 | GEO

Differential expression of lncRNA in peripheral blood lymphocytes of Xinjiang Kazakh patients with essential hypertension

Project description:Investigate long non-coding RNA (lncRNA) expression characteristics in the peripheral blood lymphocytes of Xinjiang Kazakh people with essential hypertension.

2023-06-10 | GSE234085 | GEO

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Single-cell RNA-seq of rice roots grown in gel, non-compacted soil and compacted soil conditions

Project description:We report both raw and processed scRNA-seq profiling reveals how root tissues adapt to soil conditions and compaction stress

2024-02-01 | GSE251706 | GEO

Paleoproteomics of archaeological fibres from Xinjiang

Project description:A large corpus of 112 keratin extracts from archaeological fibres collected in Bronze Age and Iron Age sites of the Keriya valley in the Taklamakan desert (Xinjiang, China) was analyzed by bottom-up proteomics for archaeological purpose.

2019-09-06 | PXD012189 | Pride

fungus metagenome

Project description:Xinjiang Raw sequence reads

| PRJNA353752 | ENA