Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Terracoccus luteus strain:B3ACCR2 | isolate:LMG 30397

ABSTRACT: Terracoccus luteus B3ACCR2 genome sequencing

PROVIDER: PRJNA547122 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JACHVT01.dat.gz	Other
	JACHVT01.fasta.gz	Fasta.gz
	JACHVT01.master.dat	Other
	SRR10127777_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Terracoccus luteus strain:B3ACCR12 | isolate:LMG 30398

Project description:Terracoccus luteus B3ACCR12 genome sequencing

| PRJNA547123 | ENA

Terracoccus luteus

Project description:Terracoccus luteus overview

| PRJNA547413 | ENA

Terracoccus luteus strain:DSM 44267 | isolate:DSM 44267

Project description:Terracoccus luteus DSM 44267 genome sequencing

| PRJNA460964 | ENA

Terracoccus

Project description:Terracoccus sp. overview

| PRJNA188147 | ENA

Gene expression changes in Suillus luteus- Pinus sylvestris ectomycorrhizal roots compared to Suillus luteus free-living mycelium

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Suillus luteus ectomycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 40 days, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Suillus luteus (http://genome.jgi-psf.org/Suilu1/Suilu1.home.html) using CLC Genomics Workbench 6. mRNA profiles from Suillus luteus ectomycorrhizal roots and free-living mycelium were generated by paired-end (2x100bp) Illumina HiSeq2000 sequencing. Two biological replicates were sequenced for mycorrhizal and mycelium samples.

2015-02-06 | E-GEOD-63926 | biostudies-arrayexpress

Terracoccus sp. 273MFTsu3.1

Project description:Terracoccus sp. 273MFTsu3.1

| PRJNA187938 | ENA

Gene expression changes in Suillus luteus- Pinus sylvestris ectomycorrhizal roots compared to Suillus luteus free-living mycelium

2015-02-06 | GSE63926 | GEO

Transcription differences of Micrococcus luteus at late-exponential and stationary phase

Project description:Investigation of transcriptomic changes in M.luteus at 12hrs and 24hrs. Differences in fatty acid profiles of M. luteus at exponential and stationary phase is attributed to transcriptional changes of branched amino acid biosynthesis and degradation genes. This study is described by Pereira, J.H., E.B. Goh, J.D. Keasling, H.R. Beller and P.A. Adams in Crystal structure of FabH and factors affecting the distribution of branched fatty acids in Micrococcus luteus, which has been submitted to Acta Crystallographica Section D A 6 microarray study using total RNA recovered from six separate control cultures of Micrococcus luteus NCTC2665 strain with 3 harvested after 12hrs of growth and the other 3 after 24hrs of growth. Each chip measures the expression level of 2,374 ORF based on the draft genome sequence of Micrococcus luteus with ten 60-mer probe pairs (PM/MM) per gene, with 3-fold technical redundancy.

2012-09-24 | E-GEOD-38040 | biostudies-arrayexpress

Phaeocystidibacter luteus strain:LMG 25704

Project description:Phaeocystidibacter luteus LMG25704 genome sequence

| PRJNA575093 | ENA

Investigating the impact of heterologous expression of the Micrococcus luteus FabH on global transcription in Escherichia coli

Project description:Investigation of whole genome gene expression level changes in a E. coli fatty acid overproducing strain with or without heterologous expression of the M. luteus FabH. The strain expressing M. luteus FabH produces more methyl ketones. This study will be further described in Goh, E.B., E.E.K. Baidoo, J.D. Keasling, and H.R. Beller. Engineering of bacterial methyl ketone synthesis for biofuels.

2012-01-26 | GSE32561 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data