Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Silene noctiflora isolate:OPL-1.1

ABSTRACT: Silene noctiflora isolate:OPL-1.1 Genome sequencing and assembly

PROVIDER: PRJNA550146 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	VHZZ01.dat.gz	Other
	VHZZ01.fasta.gz	Fasta.gz
	VHZZ01.master.dat	Other
	SRR9591157_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Silene noctiflora

Project description:Silene noctiflora Genome sequencing

| PRJNA265084 | ENA

Silene noctiflora

Project description:Silene noctiflora Organism overview

| PRJNA70165 | ENA

Silene noctiflora strain:OSR

Project description:Silene noctiflora strain:OSR Genome sequencing

| PRJNA64655 | ENA

Silene noctiflora strain:BRP

Project description:Silene noctiflora strain:BRP Raw sequence reads

| PRJNA292993 | ENA

Preparation of the working viruses of B.1.1, Delta and Omicron SARS-CoV-2

Project description:To investigate the virological properties of SARS-CoV-2 variants, we amplified the clinical isolates of an early pandemic D614G-bearing isolate (B.1.1 lineage, strain TKYE610670; GISAID ID: EPI_ISL_479681), a Delta isolate (B.1.617.2 lineage, strain TKYTK1734; GISAID ID: EPI_ISL_2378732) and an Omicron isolate (BA.1 lineage, strain TY38-873; GISAID ID: EPI_ISL_7418017) and prepared the working viruses.

2022-01-07 | GSE192472 | GEO

Silene firma

Project description:Silene firma Genome sequencing and assembly

| PRJNA576118 | ENA

Silene latifolia

Project description:Silene latifolia Genome sequencing and assembly

| PRJNA448569 | ENA

Silene chalcedonica

Project description:Silene chalcedonica Mitochondrial Genome sequencing and assembly

| PRJNA698264 | ENA

Long-read transcriptome and other genomic resources for the angiosperm Silene noctiflora.

Project description:The angiosperm genus Silene is a model system for several traits of ecological and evolutionary significance in plants, including breeding system and sex chromosome evolution, host-pathogen interactions, invasive species biology, heavy metal tolerance, and cytonuclear interactions. Despite its importance, genomic resources for this large genus of approximately 850 species are scarce, with only one published whole-genome sequence (from the dioecious species Silene latifolia). Here, we provide genomic and transcriptomic resources for a hermaphroditic representative of this genus (S. noctiflora), including a PacBio Iso-Seq transcriptome, which uses long-read, single-molecule sequencing technology to analyze full-length mRNA transcripts. Using these data, we have assembled and annotated high-quality full-length cDNA sequences for approximately 14,126 S. noctiflora genes and 25,317 isoforms. We demonstrated the utility of these data to distinguish between recent and highly similar gene duplicates by identifying novel paralogous genes in an essential protease complex. Furthermore, we provide a draft assembly for the approximately 2.7-Gb genome of this species, which is near the upper range of genome-size values reported for diploids in this genus and threefold larger than the 0.9-Gb genome of Silene conica, another species in the same subgenus. Karyotyping confirmed that S. noctiflora is a diploid, indicating that its large genome size is not due to polyploidization. These resources should facilitate further study and development of this genus as a model in plant ecology and evolution.

| S-EPMC8496259 | biostudies-literature

Silene latifolia

Project description:Silene latifolia Genome sequencing

| PRJNA82263 | ENA