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ABSTRACT: Small RNA sequencing of basidiospore and different germination stages in Coprinopsis cinerea #326 strain

PROVIDER: PRJNA560364 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR9972090.fastq.gz	Fastqsanger.gz
	SRR9972091.fastq.gz	Fastqsanger.gz
	SRR9972092.fastq.gz	Fastqsanger.gz
	SRR9972093.fastq.gz	Fastqsanger.gz
	SRR9972094.fastq.gz	Fastqsanger.gz

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Project description:Small RNA sequencing of basidiospore and different germination stages in Coprinopsis cinerea #326 strain

| PRJNA560364 | ENA

Coprinopsis cinerea strain:#326

Project description:Coprinopsis cinerea strain:#326 Genome sequencing

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Blue light exposure and nutrient conditions influence the expression of genes involved in simultaneous hyphal knot formation in Coprinopsis cinerea.

Project description:To identify genes express in earliest stage of fruiting body initiation in Coprinopsis cinerea, strain #326 (AmutBmut haploid fruiting strain), genes expressed at 0, 0.5, 1, 3h after light exposure were compared by Super-SAGE Approximately, 1 million tags were sequenced from each mycelial sample to obtain 65,535 unique tags. First, we made matches between the tags and predicted genes of the WT strain, and 24.4% tags matched to predicted genes. Tags of 11.4% genes that did not match with predicted genes matched with the genome sequence of strain #326, and 64.1% of unique tags (2.5~4.5% of total tag counts) were not identified in the #326 genome sequence. In tags that matched to #326 strain genome, we obtained reads 1,000 bp upstream of the genome sequence from the tags, and found that 81% of 1000 bp upstream genome sequences contain predicted genes. The tag counts that matched the same predicted genes were incremented, and fisher’s exact test was carried out using IDEG6

2018-12-03 | GSE99617 | GEO

Project description:Transcriptomic profiles of Coprinopsis cinerea #326 basidiospores and during germination

| PRJNA560226 | ENA

Project description:UV mutagenesis on Coprinopsis cinerea #326

| PRJNA648015 | ENA

Project description:Small RNA sequencing of Coprinopsis cinerea

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Comparison of C. cinerea vegetative dikaryotic to vegetative monokaryotic mycelia

Project description:Coprinopsis cinerea vegetative dikaryotic mycelia compared to vegetative monokaryotic mycelia

2010-02-01 | GSE18540 | GEO

omparison of gene expression during meiosis between wild-type and deficient strains of Coprinopsis cinerea

Project description:This SuperSeries is composed of the following subset Series: GSE37942: Comparison of gene expression during meiosis between wild-type and rad50-deficient strains of Coprinopsis cinerea GSE37943: Comparison of gene expression during meiosis between wild-type and msh5-deficient strains of Coprinopsis cinerea Refer to individual Series

2012-05-14 | E-GEOD-37968 | biostudies-arrayexpress

Project description:Genome resequencing of Coprinopsis cinerea AmutBmut pab1-1 #326

| PRJNA573619 | ENA

5mC oxidation products in the nucleic acids of the Basidiomycete fungi Laccaria bicolor and Coprinopsis cinerea

Project description:We analyzed oxidized 5-methylcytosine derivatives 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxylcytosine in nucleic acids of multicellular fungi Laccaria bicolor and Coprinopsis cinerea which have been used as models to study DNA methylation, developmental processes and symbiotic interactions. All three cytosine derivatives were detected in the genomes of both fungi, and importantly, we discovered 5carC in the RNA fractions, potentially including large non-coding, messenger RNAs and small RNA molecules, indicating gene regulatory functions of 5carC.

2022-01-16 | GSE185550 | GEO

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