Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis halleri isolate:I30 | cultivar:I30

ABSTRACT: Arabidopsis halleri subsp. halleri - I30 population - hydroponic

PROVIDER: PRJNA564209 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Arabidopsis halleri subsp. halleri

Project description:Arabidopsis halleri subsp. halleri Genome sequencing and assembly

| PRJNA422908 | ENA

Arabidopsis halleri subsp. halleri

Project description:Raw sequence reads and transcriptome assembly of a metallicolous Polish population of Arabidopsis halleri subsp. halleri

| PRJNA388549 | ENA

Genomic data from pooled root and shoot tissue of Arabidopsis thaliana, Arabidopsis halleri and Arabidopsis lyrata

Project description:Gene copy number variation (CNV) is a form of genetic polymorphism that contributes significantly to genome size and function but remains poorly characterized due to technological limitations. Inter-specific comparisons of CNVs in recently diverged plant species are crucial to uncover selection patterns underlying adaptation of a species to stressful environments. Especially given that gene amplifications have long been implicated in emergence of species-specific traits, we conducted a genome-wide survey to identify species-specific gene copy number expansions and deletions in the model extremophile species - Arabidopsis halleri that has diverged in evolutionarily recent time from Arabidopsis thaliana. Cross-species cDNA array based comparative genomic hybridization was employed to compare and identify gene copy number variation in the two sister-species - the metallophyte Arabidopsis halleri and non-metallophyte Arabidopsis lyrata, both relative to Arabidopsis thaliana. We uncovered an unprecedented level of gene copy number polymorphism in Arabidopsis halleri, with a species-specific enrichment of metal homeostasis function in the genes found to be copy number expanded, thus indicating CNV as a mechanism that underlies the key physiological trait of metal hyperaccumulation and hypetolerance in A. halleri.

2016-09-30 | GSE52003 | GEO

Arabidopsis halleri subsp. halleri strain:Wild plants

Project description:Arabidopsis halleri subsp. halleri strain:Wild plants Genome sequencing

| PRJNA217703 | ENA

Arabidopsis halleri subsp. gemmifera

Project description:Arabidopsis halleri subsp. gemmifera Genome sequencing

| PRJNA170229 | ENA

Arabidopsis halleri

Project description:Arabidopsis halleri Genome sequencing

| PRJNA323150 | ENA

Arabidopsis halleri subsp. gemmifera

Project description:Denovo assembly of Arabidopsis halleri subsp. gemmifera

| PRJDB4678 | ENA

Arabidopsis halleri

Project description:Arabidopsis halleri Genome sequencing and assembly

| PRJNA492199 | ENA

Arabidopsis halleri

Project description:AhNAS2 suppression in Arabidopsis halleri roots

| PRJNA145285 | ENA

AhNAS2 suppression in Arabidopsis halleri roots

Project description:The model Zn hyperaccumulators Arabidopsis halleri and Noccaea caerulescens share elevated nicotianamine synthase (NAS) expression relative to non-accumulators among a core of alterations in metal homeostasis gene expression. Suppression of AhNAS2 expression by RNAi resulted in strongly reduced root NA accumulation and a concomitant decrease in root-to-shoot-translocation of Zn but not of other micronutrients. Few secondary effects on the root transcriptome were detected by microarray analysis.

2011-12-31 | GSE31778 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data