Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bulk soil

ABSTRACT: bulk soil Raw sequence reads

PROVIDER: PRJNA565645 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10177015.fastq.gz	Fastqsanger.gz
	SRR10177016.fastq.gz	Fastqsanger.gz
	SRR10177017.fastq.gz	Fastqsanger.gz
	SRR10177018.fastq.gz	Fastqsanger.gz
	SRR10177019.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Bulk Soil Microbiome

Project description:Bulk Soil Microbiome Raw sequence reads

| PRJNA841233 | ENA

Sorghum rhizosphere soil and bulk soil

Project description:Sorghum rhizosphere soil and bulk soil Raw sequence reads

| PRJNA730198 | ENA

Sedum alfredii rhizosphere and bulk soil

Project description:Sedum alfredii rhizosphere and bulk soil Raw sequence reads

| PRJNA611001 | ENA

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

Project description:Microbial communities in the rhizosphere make significant contributions to crop health and nutrient cycling. However, their ability to perform important biogeochemical processes remains uncharacterized. Important functional genes, which characterize the rhizosphere microbial community, were identified to understand metabolic capabilities in the maize rhizosphere using GeoChip 3.0-based functional gene array method. Triplicate samples were taken for both rhizosphere and bulk soil, in which each individual sample was a pool of four plants or soil cores. To determine the abundance of functional genes in the rhizosphere and bulk soils, GeoChip 3.0 was used.

2014-09-12 | E-GEOD-61338 | biostudies-arrayexpress

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

2014-12-10 | E-MTAB-2920 | biostudies-arrayexpress

Haloxylon ammodendron, Cistanche deserticola, rhizosphere soil and bulk soil

Project description:Haloxylon ammodendron, Cistanche deserticola, rhizosphere soil and bulk soil Raw sequence reads

| PRJNA761515 | ENA

soil metagenome

Project description:Dinghushan bulk soil Raw sequence reads

| PRJNA417580 | ENA

RNA-Seq Analysis to confirm Different Transcriptomic Profiles of Soil-Derived Functional Module Consortia.

Project description:Purpose: Deconstructing the soil microbiome into reduced-complexity functional modules represents a novel method of microbiome analysis. The goals of this study are to confirm differences in transcriptomic patterns among five functional module consortia. Methods: mRNA profiles of 3 replicates each of functional module enrichments of soil inoculum in M9 media with either 1) xylose, 2) n-acetylglucosamine, 3) glucose and gentamycin, 4) xylan, or 5) pectin were generated by sequencing using an Illumina platform (GENEWIZ performed sequencing). Sequence reads that passed quality filters were aligned to a soil metagenome using Burrows Wheeler Aligner. Resulting SAM files were converted to raw reads using HTSeq, and annotated using Uniref90 or EGGNOG databases. Results: To reduce the size of the RNA-Seq counts table and increase its computational tractability, transcripts containing a minimum of 75 total counts, but no more than 3 zero counts, across the 15 samples were removed. The subsequent dataset was normalized using DESeq2, resulting in a dataset consisting of 6947 unique transcripts across the 15 samples, and 185,920,068 reads. We identified gene categories that were enriched in a sample type relative to the overall dataset using Fisher’s exact test. Conclusions: our dataset confirms that the functional module consortia generated from targeted enrichments of a starting soil inoculum had distinct functional trends by enrichment type.

2020-01-14 | GSE143587 | GEO

Bulk soil rhizomicrobiome

Project description:Bulk soil rhizomicrobiome

| PRJEB47875 | ENA

Rhizosphere and bulk soil/sediment of Phragmites australis

Project description:Rhizosphere and bulk soil/sediment of Phragmites australis Raw sequence reads

| PRJNA605303 | ENA